griffithlab / DeepSVRLinks
☆51Updated 6 years ago
Alternatives and similar repositories for DeepSVR
Users that are interested in DeepSVR are comparing it to the libraries listed below
Sorting:
- Clinical interpretation of somatic mutations in cancer☆49Updated 9 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆72Updated 2 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- ☆44Updated 7 years ago
- ☆69Updated 3 years ago
- ☆23Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- ☆19Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆88Updated 3 weeks ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated 2 weeks ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 2 months ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Tumor Mutational Burden☆63Updated 3 months ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆55Updated this week