Alternatives and similar repositories for DeepSVR

Users that are interested in DeepSVR are comparing it to the libraries listed below

• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆47Updated 6 months ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• Jeltje / varscan2
  Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2
  ☆29Updated 7 years ago
• KarchinLab / 2020plus
  Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
  ☆49Updated last year
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆40Updated 9 years ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆45Updated 3 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• broadinstitute / oncotator
  ☆69Updated 3 years ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 6 years ago
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆27Updated 2 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆85Updated 3 months ago
• CshlSiepelLab / LINSIGHT
  ☆26Updated 2 months ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆35Updated 4 years ago
• parklab / SigMA
  Mutational signature analysis for low statistics SNV data
  ☆65Updated last year
• mdozmorov / gwas2bed
  Extracting disease-specific genomic coordinates from GWAS catalog
  ☆21Updated 5 years ago
• gagneurlab / absplice
  ☆39Updated last month
• reiterlab / treeomics
  Decrypting somatic mutation patterns to reveal the evolution of cancer
  ☆56Updated 4 years ago
• Wedge-lab / battenberg
  Battenberg R package for subclonal copynumber estimation
  ☆90Updated last month
• parklab / ShatterSeek
  ☆71Updated 2 years ago
• rhshah / IMPACT-Pipeline
  Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
  ☆57Updated 4 years ago
• bioinfo-pf-curie / TMB
  Tumor Mutational Burden
  ☆61Updated 3 weeks ago
• cancer-genomics / delfi_scripts
  ☆74Updated 4 years ago
• getzlab / deTiN
  DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…
  ☆51Updated 3 years ago
• PGDX / cerebro-paper
  ☆23Updated 6 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆32Updated 3 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 6 months ago
• griffithlab / pVAC-Seq
  DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools
  ☆61Updated 6 years ago
• taylor-lab / hotspots
  Identifying recurrent mutations in cancer
  ☆37Updated 4 years ago
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆98Updated 3 years ago
• dariober / cnv_facets
  Somatic copy variant caller (CNV) for next generation sequencing
  ☆74Updated 11 months ago