griffithlab / DeepSVRLinks
☆51Updated 6 years ago
Alternatives and similar repositories for DeepSVR
Users that are interested in DeepSVR are comparing it to the libraries listed below
Sorting:
- ☆69Updated 3 years ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 11 months ago
- ☆23Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Updated last year
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Burden testing against public controls☆50Updated last year
- ☆26Updated 7 months ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- ☆36Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Battenberg R package for subclonal copynumber estimation☆95Updated last month
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Updated 6 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- ☆19Updated 7 years ago
- Tumor Mutational Burden☆63Updated 6 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆28Updated 2 years ago
- ☆39Updated 6 months ago
- ☆44Updated 7 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago