openwdl / wdlLinks
Specification for the Workflow Description Language (WDL).
☆817Updated last week
Alternatives and similar repositories for wdl
Users that are interested in wdl are comparing it to the libraries listed below
Sorting:
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,023Updated this week
- Common Workflow Language reference implementation☆352Updated last week
- A curated list of nextflow based pipelines☆598Updated 3 weeks ago
- An open source platform for managing and analyzing biomedical big data☆404Updated this week
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆682Updated this week
- Bioinformatics containers☆731Updated 2 months ago
- C library for high-throughput sequencing data formats☆860Updated this week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,008Updated 10 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,327Updated last week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆686Updated this week
- Workflow Description Language developer tools & local runner☆188Updated this week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆836Updated last month
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆680Updated this week
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,020Updated last week
- bedtools - the swiss army knife for genome arithmetic☆985Updated 4 months ago
- A curated collection of Nextflow implementation patterns☆363Updated last year
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆781Updated 2 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,439Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,476Updated last month
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,745Updated this week
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,470Updated 7 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆834Updated last month
- Near-optimal RNA-Seq quantification☆693Updated 3 months ago
- BWK awk modified for biological data☆624Updated 2 years ago
- Haplotype VCF comparison tools☆437Updated last year
- A fast and sensitive gapped read aligner☆724Updated 7 months ago
- The next version of bwa-mem☆766Updated 2 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆495Updated this week
- Docker Images tracking the stable Galaxy releases.☆234Updated 4 months ago
- A quality control analysis tool for high throughput sequencing data☆517Updated last year