openwdl / wdlLinks
Specification for the Workflow Description Language (WDL).
☆824Updated this week
Alternatives and similar repositories for wdl
Users that are interested in wdl are comparing it to the libraries listed below
Sorting:
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,032Updated this week
- Common Workflow Language reference implementation☆351Updated last week
- A curated list of nextflow based pipelines☆605Updated 2 months ago
- An open source platform for managing and analyzing biomedical big data☆408Updated this week
- Bioinformatics containers☆744Updated last week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆696Updated last week
- Workflow Description Language developer tools & local runner☆193Updated 2 weeks ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,011Updated last year
- A curated collection of Nextflow implementation patterns☆366Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,350Updated this week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆847Updated 2 months ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆687Updated 2 weeks ago
- C library for high-throughput sequencing data formats☆872Updated last week
- Haplotype VCF comparison tools☆441Updated last year
- bedtools - the swiss army knife for genome arithmetic☆998Updated 5 months ago
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,470Updated 8 months ago
- A quality control analysis tool for high throughput sequencing data☆526Updated 2 weeks ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,024Updated last month
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆798Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,456Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,487Updated 2 months ago
- Python package with helper tools for the nf-core community.☆265Updated this week
- Java utilities for Bioinformatics☆512Updated 2 weeks ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆295Updated 7 years ago
- Efficient pythonic random access to fasta subsequences☆479Updated last week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆840Updated 3 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆519Updated this week
- Bpipe - a tool for running and managing bioinformatics pipelines☆237Updated last week
- A fast and sensitive gapped read aligner☆737Updated 8 months ago
- Near-optimal RNA-Seq quantification☆696Updated 4 months ago