Specification for the Workflow Description Language (WDL).
☆856Jul 22, 2026Updated this week
Alternatives and similar repositories for wdl
Users that are interested in wdl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,076Jul 16, 2026Updated last week
- Workflow Description Language developer tools & local runner☆203Jun 29, 2026Updated 3 weeks ago
- Educational materials for learning WDL☆131Mar 2, 2024Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated 3 months ago
- Official code repository for GATK versions 4 and up☆1,977Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,481Jan 8, 2026Updated 6 months ago
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- Workflows for germline short variant discovery with GATK4☆142May 7, 2021Updated 5 years ago
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆937Updated this week
- An app store for scientific workflows, tools, notebooks, and services☆131Updated this week
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 8 months ago
- A DSL for data-driven computational pipelines☆3,449Updated this week
- Warp Analysis Research Pipelines☆229Updated this week
- WDL plugin for pytest☆49Aug 1, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The WES API is a standard way to run and manage portable workflows.☆93Jun 11, 2026Updated last month
- Rich IDE support for Workflow Description Language☆42Mar 28, 2025Updated last year
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,069Jun 13, 2026Updated last month
- WDL tools for parsing, type-checking, and more☆28May 2, 2026Updated 2 months ago
- Workflow Description Language compiler for the DNAnexus platform☆43Jun 29, 2023Updated 3 years ago
- Deprecated☆101Aug 12, 2019Updated 6 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,480Updated this week
- A curated list of nextflow based pipelines☆629Jun 23, 2025Updated last year
- CLI for interacting with Cromwell servers☆54Apr 2, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Haplotype VCF comparison tools☆472Dec 7, 2023Updated 2 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- The next version of bwa-mem☆852Oct 15, 2025Updated 9 months ago
- ☆18Jan 24, 2018Updated 8 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated last year
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,764Mar 19, 2026Updated 4 months ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,758Updated this week
- ☆93Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Common Workflow Language reference implementation☆373Updated this week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆865May 2, 2026Updated 2 months ago
- Cloud-native genomic dataframes and batch computing☆1,070Updated this week
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆212Mar 19, 2021Updated 5 years ago
- Tools for working with genomic and high throughput sequencing data.☆371Updated this week
- Configure workflow/pipeline tests using yaml files.☆70Aug 4, 2024Updated last year
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆44Updated this week