Alternatives and similar repositories for jade-data-repo

Users that are interested in jade-data-repo are comparing it to the libraries listed below

• stjude / CICERO
  CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
  ☆40Updated 2 weeks ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆78Updated 6 months ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 3 weeks ago
• higlass / higlass-docker
  Builds a docker container wrapping higlass-server and higlass-client in nginx
  ☆32Updated 3 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆48Updated 2 years ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆36Updated last week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆121Updated this week
• getzlab / dalmatian
  dalmatian is a collection of high-level companion functions for Firecloud and FISS.
  ☆19Updated 7 months ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆85Updated 2 months ago
• mckennalab / FlashFry
  FlashFry: The rapid CRISPR target site characterization tool
  ☆77Updated last year
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆116Updated 8 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆64Updated 4 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 6 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆111Updated last year
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• sebriois / biomart
  Python biomart API
  ☆68Updated 2 years ago
• LHentges / LanceOtron
  ☆29Updated last year
• griffithlab / pVAC-Seq
  DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools
  ☆61Updated 6 years ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆93Updated 3 years ago
• 3DGenomes / TADbit
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…
  ☆105Updated this week
• Kennedy-Lab-UW / Duplex-Sequencing
  ☆57Updated 5 years ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆97Updated last year
• broadinstitute / fiss
  FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
  ☆31Updated 5 months ago
• TrinityCTAT / ctat-mutations
  Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
  ☆77Updated last year
• gatk-workflows / gatk4-genome-processing-pipeline
  Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …
  ☆28Updated 4 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆101Updated 3 months ago