Alternatives and similar repositories for genomespy

Users that are interested in genomespy are comparing it to the libraries listed below

• KatarinaYuan / awesome-single-cell-foundation
  Paper collection for single cell foundation models
  ☆34Updated last year
• haiyuan-yu-lab / PIONEER
  ☆26Updated 9 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆30Updated last year
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆125Updated 7 months ago
• a96123155 / TransPHLA-AOMP
  ☆48Updated 3 years ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆71Updated 7 months ago
• TencentAILabHealthcare / DNAGPT
  ☆43Updated 2 years ago
• jimmylihui / GenBench
  ☆23Updated 3 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆46Updated 2 months ago
• gersteinlab / CellForge
  ☆87Updated 2 weeks ago
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆94Updated last week
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated 2 years ago
• jkobject / geneformer
  ☆79Updated last month
• a96123155 / UTR-LM
  ☆90Updated 11 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆26Updated 2 months ago
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆38Updated last year
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆88Updated 7 months ago
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆50Updated last year
• zaixizhang / RNAGenesis
  RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics
  ☆19Updated 3 weeks ago
• Genentech / PerturbQA
  ☆23Updated 6 months ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆65Updated last year
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆56Updated 3 years ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆94Updated last year
• jychen01 / PISTE
  ☆22Updated 11 months ago
• ShenLab / gMVP
  ☆21Updated 2 years ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆61Updated 9 months ago
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆102Updated this week
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆85Updated this week