zudi-lin / pytorch_connectomicsLinks
PyTorch Connectomics: segmentation toolbox for EM connectomics
β179Updated 3 months ago
Alternatives and similar repositories for pytorch_connectomics
Users that are interested in pytorch_connectomics are comparing it to the libraries listed below
Sorting:
- πβ60Updated 5 months ago
- A curated list of resources for 3D segmentation of neurites in EM imagesβ55Updated last year
- Simple watershed and agglomeration library for affinity graphs.β25Updated 10 months ago
- Python scripts to read and write the CREMI hdf5 file format.β39Updated 2 years ago
- The mutex watershed for image segmentation.β67Updated 4 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.β29Updated 2 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for β¦β37Updated last week
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Developmentβ31Updated 2 years ago
- β21Updated 4 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Imagesβ119Updated last year
- π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumesβ51Updated last year
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β70Updated 2 years ago
- β240Updated last year
- official implementation of the PatchPerPix instance segmentation methodβ34Updated 2 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ74Updated 4 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.β106Updated last week
- β93Updated last month
- Accepted by ISBI 2022 (Oral)β39Updated 3 years ago
- A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomeβ¦β168Updated last year
- β29Updated last year
- Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).β192Updated 7 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeveβ¦β22Updated 2 years ago
- Deep Learning for EM Connectomicsβ15Updated 3 years ago
- β198Updated 2 years ago
- Image registration using pytorchβ183Updated last year
- an image registration/augmentation/segmentation packageβ172Updated 2 years ago
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentationβ16Updated last week
- Open source volume electron microscopy (vEM) datasets for connectomics.β14Updated 10 months ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxesβ85Updated 5 years ago
- β17Updated 7 years ago