Alternatives and similar repositories for pytorch_connectomics:

Users that are interested in pytorch_connectomics are comparing it to the libraries listed below

• funkelab / lsd
  🌈
  ☆53Updated last year
• subeeshvasu / Awesome-Neuron-Segmentation-in-EM-Images
  A curated list of resources for 3D segmentation of neurites in EM images
  ☆46Updated 10 months ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated last year
• ELEKTRONN / elektronn3
  A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…
  ☆161Updated last year
• yijingru / KG_Instance_Segmentation
  [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes
  ☆83Updated 5 years ago
• M3DV / ACSConv
  [IEEE JBHI'21] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!
  ☆169Updated 9 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆19Updated 3 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆82Updated this week
• jocpae / clDice
  ☆221Updated 11 months ago
• MIC-DKFZ / napari-sam
  ☆226Updated 10 months ago
• uncbiag / easyreg
  an image registration/augmentation/segmentation package
  ☆168Updated 2 years ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆112Updated 11 months ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆19Updated last year
• looooongChen / instance_segmentation_with_pixel_embeddings
  Instance segmentation via deep pixel embedding
  ☆23Updated 4 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆43Updated 7 months ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆19Updated 2 months ago
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆27Updated 2 years ago
• junyuchen245 / ViT-V-Net_for_3D_Image_Registration_Pytorch
  Vision Transformer for 3D medical image registration (Pytorch)
  ☆309Updated 2 years ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆43Updated 2 years ago
• Duoduo-Qian / Medical-image-registration-Resources
  Medical image registration related books, tutorials, papers, datasets, toolboxes and deep learning open source codes
  ☆171Updated this week
• gvtulder / elasticdeform
  Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).
  ☆186Updated 2 months ago
• learn2reg / tutorials2019
  ☆188Updated 4 years ago
• InsightSoftwareConsortium / ITKElastix
  An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
  ☆221Updated 2 weeks ago
• sartorius-research / LIVECell
  ☆182Updated last year
• Limingxing00 / MitoEM2021-Challenge
  Accepted by ISBI 2022 (Oral)
  ☆38Updated 2 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆66Updated 2 years ago
• giesekow / deepvesselnet
  Implementation of the DeepVesselNet deep learning network
  ☆143Updated last year
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated last year
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆132Updated this week