zudi-lin / pytorch_connectomicsLinks
PyTorch Connectomics: segmentation toolbox for EM connectomics
β179Updated 2 months ago
Alternatives and similar repositories for pytorch_connectomics
Users that are interested in pytorch_connectomics are comparing it to the libraries listed below
Sorting:
- πβ60Updated 4 months ago
- A curated list of resources for 3D segmentation of neurites in EM imagesβ54Updated last year
- Simple watershed and agglomeration library for affinity graphs.β25Updated 9 months ago
- Python scripts to read and write the CREMI hdf5 file format.β38Updated 2 years ago
- β21Updated 4 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.β29Updated 2 years ago
- Accepted by ISBI 2022 (Oral)β39Updated 3 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Imagesβ118Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Developmentβ31Updated 2 years ago
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentationβ16Updated last year
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for β¦β36Updated 3 weeks ago
- β238Updated last year
- Deep Learning for EM Connectomicsβ15Updated 3 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.β100Updated this week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ74Updated 4 years ago
- The mutex watershed for image segmentation.β67Updated 4 years ago
- official implementation of the PatchPerPix instance segmentation methodβ34Updated 2 years ago
- π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumesβ51Updated last year
- Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).β191Updated 6 months ago
- β197Updated 2 years ago
- A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomeβ¦β168Updated last year
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeveβ¦β22Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β70Updated 2 years ago
- β89Updated 2 months ago
- β29Updated last year
- Open source volume electron microscopy (vEM) datasets for connectomics.β14Updated 9 months ago
- A unified environment for DNN-based automated segmentation of neuronal EM imagesβ37Updated last year
- β93Updated 3 weeks ago
- Joint training of denoising and segmentation.β74Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.β57Updated 3 weeks ago