frankier / singslurm2
Snakemake + Singularity + SLURM
☆9Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for singslurm2
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆16Updated last year
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆12Updated last month
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 4 months ago
- A GenePattern module for running the ssGSEA method☆12Updated last year
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 3 years ago
- Universal RObust Peak Annotator☆15Updated 11 months ago
- Introduction to Snakemake for Bioinformatics☆18Updated this week
- deploy a snakemake pipeline directly from version control (under development)☆21Updated 2 weeks ago
- Data and workflow examples☆16Updated 6 years ago
- GRAph-based Finding of Individual Motif Occurrences☆28Updated 2 months ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 3 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated last month
- Open Targets Genetics UI☆14Updated last year
- Source code for SimBac, a bacterial genome simulator☆13Updated 2 months ago
- Fast interval intersection library☆22Updated this week
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Build and maintain multiple custom conda environments all in one place.☆37Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆20Updated 2 months ago
- ☆15Updated 9 months ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆19Updated 6 months ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Updated 2 years ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 6 years ago
- Infer the age of ancestral nodes in a tree sequence.☆19Updated this week
- CLI tool to verify workflow reproducibility☆15Updated 9 months ago
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Updated 6 years ago
- kProcessor: kmers processing framework.☆11Updated last year
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago