Alternatives and similar repositories for singslurm2:

Users that are interested in singslurm2 are comparing it to the libraries listed below

• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆16Updated last year
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated 4 months ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated last month
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 7 months ago
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 7 years ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 5 years ago
• dcjones / polee
  Analyzing RNA-Seq with approximate likelihood
  ☆26Updated 4 years ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆23Updated 2 weeks ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 9 years ago
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆18Updated last month
• neherlab / ffpopsim
  FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…
  ☆14Updated last year
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated last year
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆14Updated 2 years ago
• eelhaik / PCA_critique
  ☆13Updated 2 years ago
• EvolutionaryGenomics / scalability-reproducibility-chapter
  Data and workflow examples
  ☆16Updated 6 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 2 years ago
• sgkit-dev / vcztools
  Partial reimplementation of bcftools for VCF Zarr
  ☆12Updated this week
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated last year
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated 2 weeks ago
• RobersonLab / motif_scraper
  Tool for finding matches to degenerate sequence motifs in FASTA files.
  ☆12Updated last year
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 8 months ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆43Updated 3 weeks ago
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated 7 months ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• DugongBioinformatics / Dugong
  Dugong - Scientific Linux Container
  ☆18Updated 6 years ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆31Updated this week
• cbg-ethz / smallgenomeutilities
  smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.
  ☆11Updated this week
• lh3 / asub
  A unified array job submitter for LSF, SGE/UGE and Slurm
  ☆32Updated 5 months ago