VariantEffect / mavehgvsLinks
A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.
☆11Updated last month
Alternatives and similar repositories for mavehgvs
Users that are interested in mavehgvs are comparing it to the libraries listed below
Sorting:
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 4 months ago
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Updated 2 years ago
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆11Updated 7 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆10Updated 2 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆18Updated last month
- ☆10Updated 3 years ago
- This BLENDER has been sunsetted☆16Updated 9 months ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆13Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- Target prioritization using network representation learning☆11Updated 3 years ago
- The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) mole…☆10Updated 2 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 3 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- ☆12Updated last year
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Updated 2 years ago
- Genomic sequence preprocessing toolkit☆12Updated this week
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated last year
- Full annotation using shape-constrained trees☆25Updated last year
- ☆24Updated 4 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆21Updated last year
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated last week
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 11 months ago