VariantEffect / mavehgvsLinks
A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.
☆11Updated last month
Alternatives and similar repositories for mavehgvs
Users that are interested in mavehgvs are comparing it to the libraries listed below
Sorting:
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 4 months ago
- This BLENDER has been sunsetted☆16Updated 8 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Updated 2 years ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆13Updated 3 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆16Updated 3 weeks ago
- ☆10Updated 4 years ago
- Genomic sequence preprocessing toolkit☆12Updated last week
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated last year
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆10Updated 7 years ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆10Updated 2 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Target prioritization using network representation learning☆11Updated 3 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆13Updated 2 months ago
- Computational Biology & Bioinformatics Resources☆14Updated 2 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 3 months ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated last month
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆26Updated last year
- Universal RObust Peak Annotator☆16Updated last year
- A GenePattern module for running the ssGSEA method☆13Updated 3 months ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆10Updated 2 months ago