VariantEffect / mavehgvs
A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.
☆11Updated last month
Alternatives and similar repositories for mavehgvs:
Users that are interested in mavehgvs are comparing it to the libraries listed below
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆13Updated 2 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated 2 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated last year
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 3 months ago
- Multi-omics data normalisation, model fitting and visualisation.☆25Updated 2 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆10Updated 6 years ago
- This BLENDER has been sunsetted☆16Updated 7 months ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- ☆17Updated 4 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Predict mutated T-cell epitopes from sequencing data☆30Updated 2 months ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆10Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Updated 2 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆30Updated last month
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆21Updated 11 months ago
- ☆10Updated 4 years ago
- ☆10Updated 3 years ago
- ☆12Updated last year
- Literature mining for T cell relations☆23Updated 2 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 9 months ago
- Discoverability for gene search☆12Updated 2 years ago
- Target prioritization using network representation learning☆11Updated 3 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 2 weeks ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago