VariantEffect / mavehgvs
A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.
☆11Updated 2 months ago
Alternatives and similar repositories for mavehgvs:
Users that are interested in mavehgvs are comparing it to the libraries listed below
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated last month
- A metadata commons to store research software metadata☆40Updated last week
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated last week
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 3 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 7 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆13Updated this week
- Training material for the GWAS Catalog REST API workshop☆12Updated last year
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆21Updated 8 months ago
- ☆27Updated last month
- This BLENDER has been sunsetted☆16Updated 4 months ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆29Updated this week
- Multi-omics data normalisation, model fitting and visualisation.☆24Updated last year
- Discoverability for gene search☆12Updated 2 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆10Updated 6 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- ☆10Updated 3 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- The public repository for the Proteomic Data Commons UI and APIs☆13Updated 8 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated 3 weeks ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆13Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Genomic sequence preprocessing toolkit☆11Updated last month
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Updated 3 months ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆20Updated last year
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago