ycrc / dSQLinks
dead Simple Queue - Slurm arrays for files with jobs in them.
☆25Updated 3 years ago
Alternatives and similar repositories for dSQ
Users that are interested in dSQ are comparing it to the libraries listed below
Sorting:
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated 2 years ago
- Introduction to Snakemake for Bioinformatics☆21Updated this week
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated last year
- example singularity definition files and demos☆28Updated 7 years ago
- A brief tutorial introducing learners to the Conda environment and package management system.☆32Updated 6 years ago
- International BioHackathon Directory of Events, Projects and Communities☆12Updated 5 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Updated last year
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆24Updated 3 months ago
- Data and workflow examples☆16Updated 7 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆15Updated 4 years ago
- ☆17Updated 2 years ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆45Updated 2 weeks ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- examples of using slurm in life sciences workflows using posix file systems and object storage☆40Updated last year
- Proof of concept to use ansible + Lmod to deploy a bioinformatics server☆24Updated 6 months ago
- Misc. utilities☆11Updated 6 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆37Updated 2 years ago
- GWAS data analysis experiments☆24Updated 5 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Updated last year
- Align sequences and then parse features.☆17Updated 2 months ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated last week
- A cookiecutter template for Snakemake workflows☆60Updated 3 years ago
- Flexible omics pipeline☆17Updated 2 months ago
- Should you cite this software?☆32Updated 5 years ago
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- ☆36Updated 8 months ago
- ☆21Updated 9 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- convert a singularity image back to Docker, full circle! #containerfriends☆25Updated 5 years ago
- Snakemake tutorial materials☆19Updated 5 years ago