ycrc / dSQLinks
dead Simple Queue - Slurm arrays for files with jobs in them.
☆24Updated 3 years ago
Alternatives and similar repositories for dSQ
Users that are interested in dSQ are comparing it to the libraries listed below
Sorting:
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated last year
- A brief tutorial introducing learners to the Conda environment and package management system.☆30Updated 5 years ago
- example singularity definition files and demos☆27Updated 7 years ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated 11 months ago
- examples of using slurm in life sciences workflows using posix file systems and object storage☆41Updated last year
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 2 weeks ago
- The command-line interface to GGD☆42Updated 2 years ago
- International BioHackathon Directory of Events, Projects and Communities☆12Updated last month
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 5 years ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Updated 3 months ago
- Fishers Exact Test for Python (Cython)☆66Updated 5 months ago
- ☆21Updated 9 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Introduction to Snakemake for Bioinformatics☆21Updated last week
- Misc. utilities☆11Updated 6 years ago
- Proof of concept to use ansible + Lmod to deploy a bioinformatics server☆24Updated 3 months ago
- Genetics training camp☆21Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Align sequences and then parse features.☆17Updated 5 months ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- ☆37Updated 5 months ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆39Updated last week
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Documentation and tutorials on using AWS for biomedical research☆17Updated 4 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Updated 2 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Updated 2 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19Updated last year