bjhall / updLinks
Basic UPD caller
☆12Updated 4 years ago
Alternatives and similar repositories for upd
Users that are interested in upd are comparing it to the libraries listed below
Sorting:
- ☆16Updated this week
- ☆14Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆36Updated 2 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Updated 3 months ago
- ☆46Updated 5 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last year
- An awk-like VCF parser☆56Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated this week
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Structural Variant Index☆75Updated 10 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆67Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- ☆18Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 11 months ago
- structural variant database software☆45Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Simple vcf parser, based on PyVCF☆47Updated 6 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 3 months ago
- ☆35Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- mtDNA Variant Caller☆34Updated 9 months ago
- Burden testing against public controls☆50Updated last year
- A simple observation count database☆11Updated 4 months ago