A terminal UI for monitoring Snakemake workflows
☆24Jul 20, 2026Updated 2 months ago
Alternatives and similar repositories for snakesee
Users that are interested in snakesee are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A TUI for monitoring Snakemake workflows in real-time.☆67Mar 13, 2026Updated 6 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- Python language bindings for bwa☆12Jul 19, 2026Updated 2 months ago
- ☆12Sep 30, 2026Updated last week
- Simulate short-reads datasets using probabilistic models☆12Jun 1, 2013Updated 13 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 5 months ago
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 3 months ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 15 years ago
- just get your chrom sizes☆17Mar 17, 2026Updated 6 months ago
- A port of biocommons/hgvs to the Rust programming language☆18Updated this week
- Documentation for PEP specification and all PEPkit software☆10Oct 2, 2026Updated last week
- An extensible and performant aligner and read mapper☆107Sep 15, 2026Updated 3 weeks ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated last month
- an API for intersections of genomic data☆149Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Snakemake workflow management system and CLI generation tool☆67Oct 22, 2025Updated 11 months ago
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated last month
- Identify which human reference genome was used to align a BAM/SAM/CRAM file☆34Jul 19, 2026Updated 2 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Apr 26, 2026Updated 5 months ago
- Rust in bioinformatics and computational biology☆17Oct 22, 2022Updated 3 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated 3 weeks ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Oct 1, 2026Updated last week
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆30Updated this week
- (Ready) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/latest/☆21Updated this week
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year
- Fast genomics quality control tools for sequencing data, written in Rust.☆129Sep 29, 2026Updated last week
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated 3 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- Python bindings for WDL☆10Nov 9, 2017Updated 8 years ago
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- Multithreaded read analysis☆25May 24, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Monitor computational workflows in real time☆76Aug 14, 2026Updated last month
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Sep 14, 2026Updated 3 weeks ago
- BioPerl scripts and utilities☆11Sep 2, 2025Updated last year
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- expressions on VCFs☆93Sep 25, 2026Updated 2 weeks ago
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆201Sep 21, 2026Updated 2 weeks ago
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago