Permutect, an incredibly efficient deep learning architecture for somatic and germline variant calling
☆14Oct 22, 2026Updated this week
Alternatives and similar repositories for permutect
Users that are interested in permutect are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Updated this week
- Utility workflows for the DSP hydro.gen team (formerly palantir)☆34Oct 6, 2026Updated 2 weeks ago
- A Rust-based library for phylogenetic analysis and manipulation☆22Aug 8, 2026Updated 2 months ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- Aditive manufacturing framework☆12May 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Biology-centered data-driven quality control for scRNA-seq☆22May 22, 2023Updated 3 years ago
- Python bindings for WDL☆10Nov 9, 2017Updated 8 years ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- Python language bindings for bwa☆13Jul 19, 2026Updated 3 months ago
- ☆11Jun 13, 2024Updated 2 years ago
- Somatic Variant Call for ctDNA☆11Mar 1, 2016Updated 10 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- ☆29Sep 4, 2023Updated 3 years ago
- A terminal UI for monitoring Snakemake workflows☆26Jul 20, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Python Primer Design Library☆15Mar 27, 2026Updated 6 months ago
- Toward a Well-Calibrated Discrimination via Survival Outcome-Aware Contrastive Learning, Neurips 2024☆12Nov 5, 2025Updated 11 months ago
- LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.☆15Aug 2, 2026Updated 2 months ago
- Fast, highly accurate, read-trimming for NGS data.☆26Updated this week
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆60Oct 29, 2023Updated 2 years ago
- Open Human Genome Library☆70Dec 22, 2025Updated 10 months ago
- Covid-19 HGI WES/WGS burden test BQC-19 pipeline☆16May 26, 2022Updated 4 years ago
- fast_argv☆16May 15, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆29Jun 12, 2026Updated 4 months ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- A Boolean Algebra for Genetic Variants☆14Sep 4, 2026Updated last month
- A fully featured MinKNOW simulator for testing read until experiments.☆25Apr 28, 2025Updated last year
- Polynomial Mendelian randomization for the inference of non-linear causal effects☆14Apr 20, 2023Updated 3 years ago
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆23May 19, 2026Updated 5 months ago
- ☆70Updated this week
- use the noise☆14Apr 15, 2020Updated 6 years ago
- ☆11Apr 5, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains the code for two conformal prediction-based methods presented at ICML 2024 and NeurIPS 2024. These plug-in post-…☆13Oct 27, 2025Updated 11 months ago
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆20Aug 17, 2026Updated 2 months ago
- Notebook service☆44Updated this week
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 11 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Fast array utilities☆15Oct 16, 2026Updated last week