fastlmm / PySnpToolsLinks
A Python library for reading and manipulating genetic data.
☆23Updated last year
Alternatives and similar repositories for PySnpTools
Users that are interested in PySnpTools are comparing it to the libraries listed below
Sorting:
- Python version of Factored Spectrally Transformed Linear Mixed Models☆53Updated 5 months ago
- Genetics training camp☆21Updated 5 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated 2 months ago
- Python-based preprocessing software for Illumina methylation arrays☆41Updated 2 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 5 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 3 months ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- A framework for network analysis and display of SNPs☆19Updated 9 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 2 months ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- GWAS data analysis experiments☆24Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 3 years ago
- ☆11Updated 8 years ago
- The command-line interface to GGD☆43Updated 3 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- ☆32Updated 2 months ago
- Fine-mapping pipeline for Open Targets Genetics☆27Updated 3 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- WDL tools for parsing, type-checking, and more☆27Updated 2 months ago
- Accelerated genomics workflows in the Workflow Description Language☆34Updated last year
- Fishers Exact Test for Python (Cython)☆66Updated 7 months ago
- ☆30Updated last year
- ☆13Updated 2 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago