fastlmm / PySnpToolsLinks
A Python library for reading and manipulating genetic data.
☆23Updated last year
Alternatives and similar repositories for PySnpTools
Users that are interested in PySnpTools are comparing it to the libraries listed below
Sorting:
- Python version of Factored Spectrally Transformed Linear Mixed Models☆53Updated 5 months ago
- GWAS data analysis experiments☆24Updated 5 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 2 months ago
- Genetics training camp☆21Updated 5 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- ☆32Updated 2 months ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 5 years ago
- Accelerated genomics workflows in the Workflow Description Language☆35Updated 2 weeks ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 5 years ago
- ☆30Updated last year
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 10 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- Python-based preprocessing software for Illumina methylation arrays☆42Updated 2 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 4 months ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated 3 weeks ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 4 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- WebApp for DNA variants interpretation☆14Updated this week
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Python script for multivariate GWAS meta-analysis☆24Updated 11 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆20Updated 2 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago