fastlmm / PySnpToolsLinks
A Python library for reading and manipulating genetic data.
☆23Updated 9 months ago
Alternatives and similar repositories for PySnpTools
Users that are interested in PySnpTools are comparing it to the libraries listed below
Sorting:
- Python version of Factored Spectrally Transformed Linear Mixed Models☆52Updated 2 months ago
- Genetics training camp☆21Updated 4 years ago
- GWAS data analysis experiments☆24Updated 5 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 4 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated this week
- The command-line interface to GGD☆43Updated 2 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 4 months ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- ☆30Updated this week
- Library for indexing VCF files for random access searches by rsID☆17Updated 3 weeks ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 5 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 4 years ago
- WDL tools for parsing, type-checking, and more☆26Updated 4 months ago
- UMCU Genetics Nextflow modules☆28Updated 9 months ago
- Interface to various variant calling formats.☆30Updated last year
- Quality of life improvements for Bioinformatics in Python.☆30Updated 3 weeks ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Large scale ancestry inference from PCA data☆23Updated 2 years ago
- GPU accelerated GWAS framework based on TensorFlow☆34Updated 2 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆34Updated 5 months ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 3 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 2 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago