A Python library for reading and manipulating genetic data.
☆24Sep 3, 2026Updated last month
Alternatives and similar repositories for PySnpTools
Users that are interested in PySnpTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python version of Factored Spectrally Transformed Linear Mixed Models☆55Aug 9, 2026Updated 2 months ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- RNA-seq analysis scripts☆18Jan 8, 2026Updated 9 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 6 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 7 months ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆21Aug 10, 2026Updated 2 months ago
- Repository☆10Oct 23, 2024Updated last year
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆27Jun 7, 2026Updated 4 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 1, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Apr 10, 2016Updated 10 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Statistical tools for Quantitative Genetic Analyses☆41Apr 16, 2026Updated 5 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- ☆10Mar 4, 2025Updated last year
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 9 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10May 17, 2022Updated 4 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- Python script for multivariate GWAS meta-analysis☆25Dec 6, 2024Updated last year
- Data Visualizations for the #30DayChartChallenge☆11Apr 15, 2024Updated 2 years ago
- ☆10Jan 30, 2020Updated 6 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Contributions to the #30daychartchallenge☆11Apr 10, 2025Updated last year
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 5 years ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 9 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆13Sep 19, 2024Updated 2 years ago
- Plot allele frequencies in VCF files☆11Apr 13, 2026Updated 5 months ago
- ☆25Dec 10, 2018Updated 7 years ago