clara-parabricks-workflows / parabricks-wdlLinks
Accelerated genomics workflows in the Workflow Description Language
☆34Updated last year
Alternatives and similar repositories for parabricks-wdl
Users that are interested in parabricks-wdl are comparing it to the libraries listed below
Sorting:
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆48Updated 2 months ago
- Accelerated genomics workflows in NextFlow☆37Updated last year
- WDL tools for parsing, type-checking, and more☆27Updated last month
- A tool for simulating random mutations in any genome☆42Updated last year
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Updated last year
- Master of Pores 2☆23Updated 10 months ago
- Hitting associations with k-mers☆44Updated 3 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Updated 2 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 8 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆77Updated 3 weeks ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated last week
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 5 months ago
- UMCU Genetics Nextflow modules☆28Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- ☆18Updated 3 years ago
- ☆36Updated 6 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆46Updated 8 years ago
- Intel lab's open sourced data science framework for accelerating digital biology☆49Updated 3 weeks ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Updated last month
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 11 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago