clara-parabricks-workflows / parabricks-wdlLinks
Accelerated genomics workflows in the Workflow Description Language
☆34Updated last year
Alternatives and similar repositories for parabricks-wdl
Users that are interested in parabricks-wdl are comparing it to the libraries listed below
Sorting:
- UMCU Genetics Nextflow modules☆28Updated 11 months ago
- Accelerated genomics workflows in NextFlow☆37Updated last year
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆47Updated last month
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- A tool for simulating random mutations in any genome☆42Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆38Updated last month
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆25Updated 3 weeks ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Updated last month
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- ☆18Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Updated last week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural variant (SV) analysis tools☆38Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 7 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆75Updated this week
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆61Updated 3 weeks ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 11 months ago