Alternatives and similar repositories for parabricks-wdl

Users that are interested in parabricks-wdl are comparing it to the libraries listed below

• clara-parabricks-workflows / parabricks-nextflow
  Accelerated genomics workflows in NextFlow
  ☆34Updated 8 months ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆48Updated 11 months ago
• nf-core / setup-nextflow
  A GitHub action to install Nextflow
  ☆18Updated this week
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 8 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 8 months ago
• sigven / cpsr
  Cancer Predisposition Sequencing Reporter (CPSR)
  ☆59Updated last month
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 11 months ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆54Updated last year
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 4 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated last year
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆38Updated 7 months ago
• fansalon / TEspeX
  TEspeX - pipeline for Transposable Elements expression quantification
  ☆21Updated last year
• srbehera / DRAGEN_Analysis
  ☆32Updated last year
• UMCUGenetics / NextflowModules
  UMCU Genetics Nextflow modules
  ☆28Updated 7 months ago
• rvolden / Mandalorion-Episode-II
  Version II of Mandalorion
  ☆32Updated 6 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆33Updated 2 years ago
• HKU-BAL / Clair3-Trio
  Clair3-Trio: variant calling in trio using Nanopore long-reads
  ☆15Updated last year
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆28Updated last year
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆54Updated last month
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• hellosunking / Ktrim
  Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
  ☆32Updated 5 months ago
• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆18Updated last year
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆40Updated last week
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 6 months ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆22Updated 7 months ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated last month
• lconde-ucl / DGE
  Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
  ☆12Updated last year
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆67Updated 2 months ago