Alternatives and similar repositories for parabricks-wdl

Users that are interested in parabricks-wdl are comparing it to the libraries listed below

• clara-parabricks-workflows / parabricks-nextflow
  Accelerated genomics workflows in NextFlow
  ☆37Updated last year
• google / deeppolisher
  Transformer-based sequence correction method for genome assembly polishing
  ☆85Updated 6 months ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆49Updated last year
• NVIDIA / VariantWorks
  Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
  ☆47Updated 3 weeks ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 3 months ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• talkowski-lab / gnomad-sv-pipeline
  Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)
  ☆36Updated 5 years ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆26Updated 2 weeks ago
• mehrdadbakhtiari / adVNTR
  A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
  ☆46Updated 9 months ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆54Updated last year
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆44Updated 3 years ago
• ncbi / magicblast
  ☆37Updated 5 months ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• KCCG / mity
  mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
  ☆37Updated last week
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆73Updated 5 months ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆86Updated 6 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆28Updated 6 months ago
• refresh-bio / VCFShark
  ☆18Updated 3 years ago
• Dfam-consortium / FamDB
  FamDB file format library and utilities
  ☆31Updated 3 weeks ago
• foerstner-lab / READemption
  A pipeline for the computational evaluation of RNA-Seq data
  ☆39Updated last year
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆35Updated 3 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 3 years ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆37Updated last week
• PacificBiosciences / pbAA
  ☆26Updated 6 months ago
• zichner / primerDesign
  A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
  ☆46Updated 8 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆36Updated last week
• Gabaldonlab / jloh
  A tool to extract LOH blocks from VCF, BAM and FASTA data
  ☆24Updated last year
• srbehera / DRAGEN_Analysis
  ☆34Updated last year
• selfdecode / rd-imputation-accuracy
  Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …
  ☆23Updated last year