allenlab / QIIME2_16S_ASV_protocolLinks
☆14Updated 4 years ago
Alternatives and similar repositories for QIIME2_16S_ASV_protocol
Users that are interested in QIIME2_16S_ASV_protocol are comparing it to the libraries listed below
Sorting:
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated 3 weeks ago
- Analysis of (gut) microbiome in Qiime2 and R.☆20Updated 10 months ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 8 months ago
- ☆56Updated last year
- Course material for the metagenomics course☆44Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆119Updated last year
- R implementation of the LEfSe method☆59Updated 2 months ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆111Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Metatranscriptomics Tutorial☆62Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Metagenome analysis pipeline☆98Updated 3 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Microbiome Protocol eBook related documents and scripts.☆48Updated 4 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- ☆45Updated 5 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆32Updated 2 years ago
- ☆85Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆77Updated 4 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 weeks ago
- ☆19Updated 7 years ago