☆44May 7, 2026Updated 2 months ago
Alternatives and similar repositories for alphagenome_ft
Users that are interested in alphagenome_ft are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlphaGenome PyTorch port☆150Updated this week
- The official repository for the ARSENAL model☆16Jul 3, 2026Updated 2 weeks ago
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18May 29, 2026Updated last month
- Dataloader for applying sequence models to personalized genomics☆30Updated this week
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Apr 1, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated last month
- Identifying transcription factor binding sites from neural network contribution scores☆22Nov 8, 2025Updated 8 months ago
- PARM: Promoter Activity Regulatory Model☆23Apr 22, 2026Updated 2 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- ☆13Jan 23, 2025Updated last year
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆37Updated this week
- ☆51Mar 22, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆21Aug 28, 2025Updated 10 months ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆20Mar 2, 2026Updated 4 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆75Jul 3, 2026Updated 2 weeks ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ☆16Jul 13, 2026Updated last week
- Transcription Factor Motif Instance Neighborhood Decomposition and Interpretation☆22Updated this week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated last month
- Genomic sequence preprocessing toolkit☆14Jun 30, 2026Updated 3 weeks ago
- RNA-seq prediction with deep convolutional neural networks.☆254Aug 28, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Snakemake workflow for comparing E-G links to experimental data☆25May 27, 2026Updated last month
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆29Updated this week
- ☆99Apr 3, 2026Updated 3 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆107Jun 23, 2026Updated 3 weeks ago
- ☆34Jan 27, 2025Updated last year
- ☆17Updated this week
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆79Jun 4, 2026Updated last month
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆47Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Mar 24, 2023Updated 3 years ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago
- TF MOtif Discovery from Importance SCOres☆186May 13, 2026Updated 2 months ago
- Software for linkage disequilibrium graphical models☆18Apr 6, 2025Updated last year
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 5 years ago
- ☆25Aug 20, 2024Updated last year
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆92Sep 24, 2025Updated 9 months ago