PARM: Promoter Activity Regulatory Model
☆27Jul 27, 2026Updated 3 months ago
Alternatives and similar repositories for PARM
Users that are interested in PARM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jun 11, 2026Updated 4 months ago
- ☆52Oct 19, 2026Updated last week
- ☆18Oct 21, 2024Updated 2 years ago
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆34Jul 17, 2026Updated 3 months ago
- ☆11Aug 30, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Nanopore sequencing-based episignature detection☆19Jun 10, 2026Updated 4 months ago
- TAD Calling using spectral clustering in R☆13Aug 21, 2026Updated 2 months ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆15Oct 5, 2026Updated 3 weeks ago
- Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model☆10Jan 17, 2025Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- A suite of tools for machine learning with genomics data☆14May 25, 2026Updated 5 months ago
- Benchmarking approaches to fine-tune AlphaGenome on MPRA across distributional shifts☆14Oct 13, 2026Updated 2 weeks ago
- ☆14Jan 23, 2025Updated last year
- The official repository for the ARSENAL model☆21Jul 3, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated 3 months ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆13May 9, 2026Updated 5 months ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆32Feb 21, 2023Updated 3 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆19Jun 25, 2025Updated last year
- Massively parallel in vivo Perturb-seq☆12Jan 14, 2026Updated 9 months ago
- DEMINING: a stepwise computational framework to directly detect expressed DNA and RNA mutations in RNA deep sequencing data (DEMINING).☆11Jul 31, 2024Updated 2 years ago
- systematic explanation of attribution-based mechanisms for regulatory genomics☆17Sep 16, 2026Updated last month
- Saluki, a method to predict mRNA half-lives from sequence☆32Oct 7, 2022Updated 4 years ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆20Mar 15, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Mar 25, 2025Updated last year
- Transcription Factor Motif Instance Neighborhood Decomposition and Interpretation☆28Oct 12, 2026Updated 2 weeks ago
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆64Jul 17, 2026Updated 3 months ago
- MPRA-MNIST datasets☆20Oct 13, 2026Updated 2 weeks ago
- ☆12Feb 10, 2026Updated 8 months ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- A generative model to predict gene expression dynamics, cell population changes, and perturbation outcomes from time-series single-cell d…☆15Apr 17, 2025Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆268Sep 30, 2026Updated 3 weeks ago
- Benchmarking for gene expression from single cell latent representations☆22Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated 2 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆84Oct 21, 2026Updated last week
- ☆20Oct 16, 2026Updated last week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆77Apr 28, 2023Updated 3 years ago
- ☆109Apr 3, 2026Updated 6 months ago
- ☆14Nov 6, 2025Updated 11 months ago