Alternatives and similar repositories for INHERIT

Users that are interested in INHERIT are comparing it to the libraries listed below

• BackofenLab / CRISPRidentify
  ☆30Updated 5 months ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆30Updated 10 months ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆32Updated 3 months ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆70Updated 3 years ago
• ebiggers / flash
  FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code
  ☆12Updated 7 years ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆21Updated 3 months ago
• liu-congcong / MetaDecoder
  An algorithm for clustering metagenomic sequences.
  ☆37Updated 2 months ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆57Updated 8 months ago
• edzuf / CrisprOpenDB
  ☆18Updated 4 years ago
• EBI-Metagenomics / mettannotator
  ☆71Updated last month
• shoichisakaguchi / NeoRdRp
  ☆20Updated last year
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• segalab / SGVFinder
  ☆32Updated last year
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆57Updated 2 weeks ago
• Tropini-lab / PUPpy
  Pipeline to design taxon-specific primes in defined bacterial communities.
  ☆17Updated 4 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆61Updated this week
• Stephane-S / Simplot_PlusPlus
  ☆34Updated last year
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆79Updated 2 weeks ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆67Updated 5 months ago
• ziyewang / MetaBinner
  ☆54Updated last year
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆27Updated 3 years ago
• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆20Updated 4 years ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆48Updated 3 weeks ago
• samnooij / PathoFact
  Altered version of PathoFact to work more conveniently with SLURM and large input files
  ☆12Updated 7 months ago
• Orin-beep / HOTSPOT
  HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
  ☆10Updated last year
• dyxstat / ViralCC
  ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes
  ☆16Updated last year
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated last week