Alternatives and similar repositories for schavott:

Users that are interested in schavott are comparing it to the libraries listed below

• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆22Updated 9 months ago
• mbhall88 / streamformatics
  Real-time species-typing visualisation for nanopore data.
  ☆13Updated last year
• usnistgov / pepr
  Pipeline for Evaluating Prokaryotic References
  ☆11Updated 8 years ago
• antrec / spectrassembler
  Tool (experimental) to compute layout from overlaps with spectral algorithm
  ☆11Updated 7 years ago
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• Malfoy / BGREAT2
  Paired reads mapping on de Bruijn graph
  ☆13Updated 6 years ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆16Updated last year
• artic-network / readucks
  Nanopore read de-multiplexer
  ☆13Updated 4 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 4 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆15Updated this week
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 8 years ago
• nickloman / poredb
  ☆19Updated 7 years ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆13Updated 3 months ago
• imgag / plasmIDent
  ☆15Updated 6 months ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 2 months ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 3 years ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 6 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆24Updated 11 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆19Updated 2 months ago
• ncbi-gpipe / pgap
  (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
  ☆15Updated 6 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated last year
• sid-krish / rhometa
  metagenome population recombination rate estimation pipeline
  ☆12Updated 5 months ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 2 months ago
• TGenNorth / NASP
  Northern Arizona SNP Pipeline
  ☆19Updated 2 months ago
• maxibor / sam2lca
  Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
  ☆9Updated 4 months ago