Alternatives and similar repositories for figshare:

Users that are interested in figshare are comparing it to the libraries listed below

• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 2 years ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆28Updated last year
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• Bioconductor / TENxBrainAnalysis
  R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
  ☆12Updated last year
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 7 months ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆44Updated last month
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆25Updated 5 months ago
• canzarlab / JVis-learn
  ☆20Updated 3 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated last year
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆24Updated last month
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆14Updated last year
• alubbock / microbench
  Benchmarking and metadata tracking for Python. Extensible, with distributed/cluster support.
  ☆16Updated 6 months ago
• merfishtools / merfishtools
  MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…
  ☆14Updated 5 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆20Updated this week
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆23Updated this week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• Snakemake-Profiles / pbs-torque
  ☆16Updated last year
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• MaayanLab / appyter-catalog
  A catalog of appyter notebooks
  ☆35Updated 4 months ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• vahuynh / dynGENIE3
  Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
  ☆23Updated 11 months ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆26Updated 5 months ago
• AllenInstitute / scrattch.vis
  scRNA-seq data visualization from scrattch
  ☆26Updated 11 months ago
• vals / scilife-python-course
  ☆20Updated 12 years ago