Alternatives and similar repositories for figshare

Users that are interested in figshare are comparing it to the libraries listed below

• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆42Updated this week
• eWaterCycle / setup-singularity
  GitHub action to setup singularity
  ☆17Updated 2 years ago
• cthoyt / zenodo-client
  A tool for automated uploading and version management of scientific data to Zenodo
  ☆37Updated 3 months ago
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• viash-io / viash
  script + metadata = standalone component
  ☆43Updated last week
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month
• Snakemake-Profiles / pbs-torque
  ☆17Updated last year
• CRG-CNAG / robustica
  customizable robust Independent Component Analysis (ICA)
  ☆11Updated 11 months ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆105Updated 6 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 months ago
• CoBrALab / qbatch
  ☆33Updated 2 weeks ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated 2 years ago
• portugueslab / flammkuchen
  Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab
  ☆16Updated 8 months ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆48Updated 3 months ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated 11 months ago
• blekhmanlab / rxivist
  API providing access to papers and authors scraped from biorxiv.org
  ☆57Updated 2 years ago
• Sage-Bionetworks / synapsePythonClient
  Programmatic interface to Synapse services for Python
  ☆75Updated this week
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 3 years ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 10 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆34Updated 3 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• merfishtools / merfishtools
  MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…
  ☆14Updated 6 years ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆37Updated last week
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆55Updated 11 months ago
• manubot / try-manubot
  A repository to practice contributing to a Manubot manuscript
  ☆47Updated 3 months ago