Alternatives and similar repositories for yte:

Users that are interested in yte are comparing it to the libraries listed below

• galaxyproject / ansible-galaxy-extras
  (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…
  ☆11Updated 3 months ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 3 weeks ago
• galaxyproject / usegalaxy-playbook
  Ansible Playbook for usegalaxy.org
  ☆31Updated this week
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated 3 weeks ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• BD2KGenomics / cgcloud
  Image and VM management for Jenkins, Spark and Mesos clusters in EC2
  ☆22Updated 4 years ago
• bioboxes / bioboxes.org
  The website for bioboxes
  ☆11Updated 7 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• vsbuffalo / duckdb-vcf-extension
  ☆10Updated last month
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated 2 months ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆13Updated 7 months ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 7 months ago
• inutano / cwl-metrics
  Accumulating container resource usage with workflow metadata
  ☆19Updated 3 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 7 months ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 5 years ago
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 3 years ago
• jdidion / xphyle
  Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…
  ☆21Updated 4 months ago
• galaxyproject / infrastructure-playbook
  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegal…
  ☆11Updated last week
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆22Updated 2 months ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆67Updated 6 months ago
• ga4gh / task-execution-schemas
  ☆83Updated this week
• ga4gh / task-execution-server
  ☆11Updated 8 years ago
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated 3 weeks ago
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆37Updated 4 months ago