YAML template engine
☆44Nov 27, 2025Updated 9 months ago
Alternatives and similar repositories for yte
Users that are interested in yte are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆21Jun 13, 2022Updated 4 years ago
- ☆21Dec 26, 2025Updated 8 months ago
- A TUI for monitoring Snakemake workflows in real-time.☆67Mar 13, 2026Updated 5 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 5 months ago
- PCA in rust☆16Jul 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 5 months ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆17Jul 21, 2026Updated last month
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Aug 17, 2026Updated 2 weeks ago
- Documentation for PEP specification and all PEPkit software☆10Updated this week
- Genotype likelihood simulator for VCF/BCF files☆17May 7, 2025Updated last year
- v2.x of the microassembly based somatic variant caller☆29Aug 13, 2026Updated 2 weeks ago
- Real time monitor for snakemake☆17Jul 27, 2026Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆31Jul 1, 2026Updated 2 months ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- Parsing MHC nomenclature in the wild☆21Updated this week
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 7 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- The uncompromising Snakemake code formatter☆195Aug 18, 2026Updated 2 weeks ago
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated 4 months ago
- Project metadata manager for biological sample metadata in Python☆40Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Aug 7, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆49Aug 19, 2026Updated last week
- Fast interval intersection library☆46Jul 14, 2026Updated last month
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- expressions on VCFs☆93Mar 17, 2026Updated 5 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 11 months ago
- Creating alignment plots from bam files☆132Aug 24, 2026Updated last week
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆26Mar 11, 2019Updated 7 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- A tool for summarizing, extracting, generating and modifying DNA sequences.☆24Dec 17, 2024Updated last year