Alternatives and similar repositories for yte:

Users that are interested in yte are comparing it to the libraries listed below

• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 3 years ago
• galaxyproject / ansible-galaxy-extras
  (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…
  ☆11Updated 2 months ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆13Updated 6 months ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 2 months ago
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆37Updated 3 months ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆67Updated 5 months ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆69Updated 7 months ago
• hoffmangroup / acidbio
  ☆14Updated 2 years ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆32Updated this week
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 3 years ago
• Snakemake-Profiles / pbs-torque
  ☆16Updated last year
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated 2 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated last month
• BioContainers / mulled
  Mulled - Automatized Containerized Software Repository
  ☆65Updated 10 months ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆21Updated last month
• bio-excel / bioexcel
  ☆13Updated 6 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆26Updated 2 months ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆56Updated last month
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆25Updated 5 months ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated last year
• galaxyproject / usegalaxy-playbook
  Ansible Playbook for usegalaxy.org
  ☆31Updated this week
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 2 months ago
• galaxyproject / infrastructure-playbook
  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegal…
  ☆11Updated this week
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago