Alternatives and similar repositories for yte:

Users that are interested in yte are comparing it to the libraries listed below

• vsbuffalo / duckdb-vcf-extension
  ☆11Updated 4 months ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 3 months ago
• singularityhub / singularity2docker
  convert a singularity image back to Docker, full circle! #containerfriends
  ☆24Updated 4 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• BD2KGenomics / cgcloud
  Image and VM management for Jenkins, Spark and Mesos clusters in EC2
  ☆22Updated 4 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• galaxyproject / usegalaxy-playbook
  Ansible Playbook for usegalaxy.org
  ☆32Updated this week
• seqeralabs / wave-cli
  Command line tool for Wave containers provisioning service
  ☆14Updated 3 weeks ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆68Updated 9 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆38Updated 5 months ago
• galaxyproject / ansible-galaxy-extras
  (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…
  ☆11Updated 6 months ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• sgkit-dev / vcztools
  Partial reimplementation of bcftools for VCF Zarr
  ☆13Updated this week
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆37Updated 7 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆31Updated this week
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆165Updated last month
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆33Updated this week
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆23Updated last month
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 10 months ago
• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆20Updated 3 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated 11 months ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆32Updated this week
• seqeralabs / nf-k8s-best-practices
  A best practices guide for Nextflow on Kubernetes
  ☆19Updated last year
• dib-lab / screed
  a simple read-only sequence database, designed for short reads
  ☆66Updated last year
• ga4gh / task-execution-server
  ☆11Updated 8 years ago