Alternatives and similar repositories for yte

Users that are interested in yte are comparing it to the libraries listed below

• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆71Updated last year
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated 3 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• pycompression / xopen
  Open compressed files in Python
  ☆80Updated 2 months ago
• singularityhub / singularity2docker
  convert a singularity image back to Docker, full circle! #containerfriends
  ☆25Updated 5 years ago
• ga4gh / task-execution-schemas
  ☆92Updated 2 weeks ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆40Updated last year
• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆41Updated this week
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆35Updated 6 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆60Updated 3 years ago
• sgkit-dev / vcztools
  Partial reimplementation of bcftools for VCF Zarr
  ☆19Updated 5 months ago
• nextflow-io / nf-hello
  Nextflow plugin implementation skeleton
  ☆11Updated 3 months ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆42Updated 6 months ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆86Updated last week
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆15Updated 4 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆36Updated last week
• galaxyproject / ansible-galaxy-extras
  (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…
  ☆11Updated last year
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆62Updated this week
• epruesse / ymp
  Flexible omics pipeline
  ☆17Updated 2 months ago
• dib-lab / screed
  a simple read-only sequence database, designed for short reads
  ☆65Updated last year
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated 3 weeks ago
• jdidion / xphyle
  Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…
  ☆23Updated 7 months ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆20Updated 3 years ago
• pepkit / looper
  Modular job submitter for arbitrary pipelines or commands.
  ☆24Updated last month
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆181Updated last month
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago