yte-template-engine / yteLinks
YAML template engine
☆42Updated 2 months ago
Alternatives and similar repositories for yte
Users that are interested in yte are comparing it to the libraries listed below
Sorting:
- Configure workflow/pipeline tests using yaml files.☆71Updated last year
- SQL support plugin for Nextflow☆32Updated 4 months ago
- Open compressed files in Python☆81Updated 3 months ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Updated last year
- Nextflow plugin implementation skeleton☆11Updated 5 months ago
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- The uncompromising Snakemake code formatter☆182Updated last week
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36Updated 8 months ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Monitor computational workflows in real time☆73Updated last year
- Build and maintain multiple custom conda environments all in one place.☆40Updated last year
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- Flexible omics pipeline☆17Updated 3 months ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆24Updated 9 months ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆15Updated 4 years ago
- A Github action for running a Snakemake workflow☆62Updated last month
- Augmented Interval Tree implemented in Cython/C☆20Updated last year
- Partial reimplementation of bcftools for VCF Zarr☆20Updated 3 weeks ago
- The WES API is a standard way to run and manage portable workflows.☆87Updated last month
- convert a singularity image back to Docker, full circle! #containerfriends☆25Updated 5 years ago
- A statically generated catalog of available Snakemake workflows☆36Updated this week
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Updated 3 years ago
- A cookiecutter template for Snakemake workflows☆60Updated 4 years ago
- ☆93Updated 2 months ago
- Documentation of the Snakemake-Profiles project.☆55Updated 3 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Convert bioinformatics file formats to Zarr☆44Updated 3 weeks ago
- An Ansible role for installing and configuring CernVM-FS (CVMFS)☆14Updated last week