AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and produces reliable tracking of multiple unmarked animals. An easy-to-use user interface further enables manual inspection and curation of results.
☆75Sep 26, 2023Updated 2 years ago
Alternatives and similar repositories for AlphaTracker
Users that are interested in AlphaTracker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A gui for browsing joint calcium imaging + behavioral data.☆56Jan 22, 2025Updated last year
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆208Feb 9, 2024Updated 2 years ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆199Oct 3, 2024Updated last year
- End-user version of the Mouse Action Recognition System (MARS)☆80Mar 26, 2024Updated last year
- Free, platform independent, behavior tracking software.☆145Jun 20, 2025Updated 9 months ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆355Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆41Jan 6, 2026Updated 2 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Jul 4, 2022Updated 3 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆62Jul 1, 2023Updated 2 years ago
- Learning trajectory representations using self-supervision and programmatic supervision.☆87Sep 14, 2022Updated 3 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28May 22, 2022Updated 3 years ago
- For developers and people training MARS models☆19Mar 15, 2024Updated 2 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆84Mar 13, 2026Updated last week
- R Scripts to analyze deep lab cut point data and related data☆72Jan 25, 2023Updated 3 years ago
- Closed-loop feedback optogenetic system☆10Apr 5, 2022Updated 3 years ago
- Analysis of ultrasonic vocalizations from mice using computer vision and machine learning☆27Jun 30, 2023Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆43Jul 26, 2021Updated 4 years ago
- A deep learning framework for multi-animal pose tracking.☆567Updated this week
- Distributed behavioral experiments☆94Feb 19, 2025Updated last year
- ☆20Nov 28, 2023Updated 2 years ago
- An R toolbox for analysing movement across space and time☆10Jan 16, 2026Updated 2 months ago
- Implementation of Aligned Cluster Analysis☆18Sep 29, 2018Updated 7 years ago
- ☆38Mar 22, 2021Updated 5 years ago
- Package for removing motion artifacts from two-channel imaging☆11Aug 29, 2023Updated 2 years ago
- DAQ firmware for V3 and V4 Miniscope platforms☆18Feb 20, 2024Updated 2 years ago
- ☆106Feb 26, 2026Updated 3 weeks ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆188Jan 26, 2026Updated last month
- System for wireless optogenetic stimulation☆13Jun 14, 2022Updated 3 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Jul 15, 2020Updated 5 years ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆13Jan 10, 2023Updated 3 years ago
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆53Apr 22, 2024Updated last year
- Calcium imaging inter-session alignment☆17Mar 2, 2026Updated 3 weeks ago
- a module for kinematic analysis of deeplabcut outputs☆153Dec 13, 2023Updated 2 years ago
- Accelerated pose estimation and tracking using semi-supervised learning☆290Mar 2, 2026Updated 3 weeks ago
- Behavioral Keypoint Discovery☆39Jun 13, 2023Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆27Dec 21, 2023Updated 2 years ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆21Dec 16, 2025Updated 3 months ago
- Quantify user-defined behaviors.☆105Jan 23, 2026Updated 2 months ago