darwinjob / pyramidio-bioformats
Image pyramid reader and writer enhanced with bio-formats library reader
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for pyramidio-bioformats
- Raw format to OME-TIFF converter☆48Updated 2 weeks ago
- Bio-Formats image file format to raw format converter☆82Updated 2 weeks ago
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated last week
- A fully scalable robust image feature extraction library.☆19Updated last week
- ☆32Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆117Updated 2 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆23Updated 5 months ago
- Python project containing Ice remoting code for OMERO☆22Updated last month
- Algorithmic and Utility Extensions for the Imaris Program☆14Updated last month
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated last year
- Create 3D/4D animations using a natural language-based syntax☆58Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆204Updated 2 months ago
- Cookiecutter for napari plugins☆69Updated this week
- CLIJ is deprecated. Visit CLIJ2☆56Updated 3 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆31Updated 6 months ago
- ☆31Updated last week
- manually align specimens to annotated 3D spaces☆19Updated last year
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆69Updated this week
- ☆22Updated last year
- Python API and Jupyter widget for Vitessce☆40Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆46Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆33Updated 3 months ago
- The ImageJ plugin to run deep-learning models☆86Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- Open Source Cross-Platform C++ library to read CZI image files☆70Updated 2 years ago
- ☆59Updated last week
- CytoData 2016 – origin story☆17Updated 7 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- Read and write life sciences file formats☆132Updated last month