darwinjob / pyramidio-bioformats
Image pyramid reader and writer enhanced with bio-formats library reader
☆13Updated last year
Alternatives and similar repositories for pyramidio-bioformats:
Users that are interested in pyramidio-bioformats are comparing it to the libraries listed below
- Bio-Formats image file format to raw format converter☆88Updated last week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆132Updated 3 weeks ago
- A fully scalable robust image feature extraction library.☆24Updated this week
- Raw format to OME-TIFF converter☆50Updated last month
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆27Updated 10 months ago
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated 3 months ago
- Interactive visualization of spatial omics data☆53Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 6 months ago
- Python program to generate NetworkX graphs from segmented images.☆15Updated 2 years ago
- Command-line client for Fractal☆45Updated this week
- Python project containing Ice remoting code for OMERO☆23Updated 2 weeks ago
- A minimal Zarr image viewer based on Viv.☆146Updated 2 weeks ago
- ☆35Updated last week
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆14Updated last month
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆34Updated 3 weeks ago
- Interface to the Bioformats Java library☆13Updated 3 months ago
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆15Updated last year
- Easily read and write ome-tiff images in python☆27Updated 11 months ago
- GPU-accelerated image processing for everyone☆52Updated 9 months ago
- Multiple file format reading directly into napari using pure Python☆35Updated 9 months ago
- ☆35Updated last week
- A whole-slide image reader for TensorFlow☆23Updated 6 months ago
- MethodsJ2☆14Updated 2 years ago
- ☆26Updated 3 months ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆27Updated 3 years ago
- Cookiecutter for napari plugins☆69Updated 5 months ago
- Python API and Jupyter widget for Vitessce☆44Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated this week
- A relabeling tool for tiled segmentation with Dask☆16Updated 7 months ago