JAVA framework for accurate SNV assessment
☆12Jun 28, 2021Updated 5 years ago
Alternatives and similar repositories for JACUSA
Users that are interested in JACUSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆74Jul 18, 2025Updated last year
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43May 11, 2017Updated 9 years ago
- ☆60Jul 17, 2025Updated last year
- SNP-free RNA editing Identification Toolkit☆50Jan 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Summary of a single or multiple MAF files.☆14Feb 5, 2025Updated last year
- ☆14Jan 28, 2019Updated 7 years ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 4 years ago
- Convenience functions for VMD-TCL scripting☆14Apr 3, 2026Updated 6 months ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 5 years ago
- R-Ladies Los Angeles meetup presentations☆11Oct 27, 2018Updated 7 years ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 4 years ago
- RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq…☆12Jul 13, 2016Updated 10 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Visualization and charting JS library for streaming genomic data☆19Dec 4, 2024Updated last year
- Texts and assets for the Sociocracy 3.0 Canvas Series☆16May 21, 2024Updated 2 years ago
- Pipeline for universal design of target-enrichment probes from various sources of genomic data.☆29Oct 18, 2020Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Jul 27, 2026Updated 2 months ago
- A software research tool for the analysis of structural communication in protein ensembles☆15Mar 24, 2022Updated 4 years ago
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 10 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- ☆14Jul 7, 2024Updated 2 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14May 23, 2016Updated 10 years ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated last year
- Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions☆15Jul 1, 2023Updated 3 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 8 years ago
- A python implementation of the Statistical Coupling Analysis (SCA)☆27Jul 17, 2019Updated 7 years ago
- RNAsik - more than just a pipeline☆14Feb 6, 2024Updated 2 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.☆17May 30, 2022Updated 4 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- ☆17Jan 13, 2025Updated last year
- ☆16Dec 22, 2025Updated 9 months ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- Development version of the pbctools plugin for VMD.☆17Aug 19, 2025Updated last year
- Repo for software related to Software Systems at Olin College.☆14Oct 5, 2015Updated 11 years ago