dieterich-lab / JACUSA
JAVA framework for accurate SNV assessment
☆11Updated 3 years ago
Alternatives and similar repositories for JACUSA:
Users that are interested in JACUSA are comparing it to the libraries listed below
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Adapters for trimming☆30Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A Python library for reading and writing PacBio® data files☆39Updated 2 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- Genomic Association Tester☆31Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Third-generation fusion gene detection☆14Updated last year
- Personal diploid genome creation and coordinate conversion☆25Updated 3 weeks ago
- UCSC Nanopore☆43Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago