BenLangmead / crossbow
Variant calling from sequence reads using cloud computing
☆39Updated 11 years ago
Alternatives and similar repositories for crossbow:
Users that are interested in crossbow are comparing it to the libraries listed below
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆40Updated 2 months ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 2 months ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Python graph database framework for bioinformatics☆93Updated 3 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 2 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated this week
- Fast and memory-efficient sequencing error corrector☆92Updated last year
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- GenomicsDB☆111Updated 2 years ago
- Isaac Genome Alignment Software☆36Updated 10 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- The Genome Modeling System installer☆78Updated 9 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- CRAM format specification and java API for read data.☆59Updated 6 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆73Updated last month
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆29Updated 2 years ago