Alternatives and similar repositories for cytoscape-automation:

Users that are interested in cytoscape-automation are comparing it to the libraries listed below

• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆49Updated 2 years ago
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 4 years ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆124Updated this week
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 8 months ago
• GeneMANIA / genemania
  GeneMANIA helps you predict the function of your favourite genes and gene sets.
  ☆42Updated last year
• cytoscape / py4cytoscape
  Python library for calling Cytoscape Automation via CyREST
  ☆78Updated last month
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆88Updated 2 months ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆26Updated 7 years ago
• sebriois / biomart
  Python biomart API
  ☆65Updated last year
• FredHutch / maxquant-pipeline
  MaxQuant Automated Pipeline
  ☆22Updated 4 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• dgrapov / MetaMapR
  Network mapping tool for metabolomics + data.
  ☆50Updated 9 years ago
• YuLab-SMU / DOSE
  Disease Ontology Semantic and Enrichment analysis
  ☆119Updated 2 weeks ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆27Updated 8 months ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated last year
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆63Updated 3 years ago
• pkerpedjiev / gene-citation-counts
  ☆33Updated 4 years ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆139Updated this week
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆114Updated 4 months ago
• calipho-sib / feature-viewer
  Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project
  ☆112Updated 7 months ago
• cytoscape / cytoscape-tutorials
  Collection of modular Cytoscape tutorials for online presentation using reveal.js
  ☆316Updated last week
• kmhernan / awesome-bioinformatics-formats
  Curated list of bioinformatics formats and publications
  ☆53Updated 6 years ago
• MetabolicAtlas / MetabolicAtlas
  Open source genome-scale metabolic models of human and model animals
  ☆21Updated 2 months ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• iVis-at-Bilkent / pathway-mapper
  PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
  ☆57Updated last year
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆87Updated this week
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago