Collection of scripts that include programmatic io and control of Cytoscape
☆92May 21, 2026Updated last month
Alternatives and similar repositories for cytoscape-automation
Users that are interested in cytoscape-automation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- Python library for calling Cytoscape Automation via CyREST☆87Feb 3, 2026Updated 4 months ago
- New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community☆58Dec 3, 2025Updated 6 months ago
- Cytoscape App Store web application code☆19Updated this week
- Core App: REST API module for Cytoscape☆31Jul 31, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Aug 30, 2018Updated 7 years ago
- Collection of modular Cytoscape tutorials for online presentation using reveal.js☆329Updated this week
- R package for WikiPathways API☆20Nov 3, 2025Updated 7 months ago
- Python utilities for Cytoscape and Cytoscape.js☆176Feb 21, 2022Updated 4 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 3 months ago
- Cytoscape.js based network visualizer for Jupyter Notebook☆37Jan 4, 2023Updated 3 years ago
- Network visualization webapp.☆14Mar 6, 2023Updated 3 years ago
- ☆11Oct 23, 2025Updated 8 months ago
- Read, write and format Excel files using R☆15Sep 29, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ConsensusTME Gene Sets and R Script☆40Jun 6, 2024Updated 2 years ago
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Tool for reliability assessment of omics peprocessing☆12Jan 13, 2026Updated 5 months ago
- ChemAudit helps researchers validate, standardize, and assess the quality of chemical structures before using them in machine learning mo…☆63Jun 18, 2026Updated last week
- Cytoscape 3 sample code for App developers.☆22Jul 7, 2025Updated 11 months ago
- My notes/usage examples for various Bioconductor packages☆15Jan 9, 2017Updated 9 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- Cytoscape: an open source platform for network analysis and visualization☆717Sep 27, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- ☆27Mar 2, 2026Updated 3 months ago
- A Cytoscape Jupyter widget☆289Apr 6, 2026Updated 2 months ago
- The R Bioconductor package for scMAGeCK.☆13May 25, 2026Updated last month
- Computational biology utility scripts☆19Apr 16, 2025Updated last year
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Connect the dots in networks.☆21Aug 28, 2020Updated 5 years ago
- A Cytoscape.js extension for the hierarchical clustering algorithm☆10Jul 26, 2017Updated 8 years ago
- Out of date. Refer to https://blog.js.cytoscape.org/tutorials/☆38Jul 7, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 14, 2025Updated 8 months ago
- Jupyter lab widget for rendering graphs (networks)