cytoscape / cytoscape-automation
Collection of scripts that include programmatic io and control of Cytoscape
☆85Updated 2 weeks ago
Alternatives and similar repositories for cytoscape-automation:
Users that are interested in cytoscape-automation are comparing it to the libraries listed below
- A python package for pathway visualization☆38Updated 4 years ago
- A BioJS viewer for protein sequence features☆49Updated 2 years ago
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆42Updated last year
- Python library for calling Cytoscape Automation via CyREST☆76Updated last week
- Collection of modular Cytoscape tutorials for online presentation using reveal.js☆316Updated last month
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 7 months ago
- MyGene.info: A BioThings API for gene annotations☆124Updated 3 weeks ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- integrated RNA-seq Analysis Pipeline☆85Updated 6 years ago
- GO enrichment with python -- pandas meets networkx☆87Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- Parsing tools for GTF (gene transfer format) files☆116Updated last week
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆57Updated 11 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆138Updated last week
- Python biomart API☆65Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆233Updated last week
- A Python library for interacting with the Galaxy API☆90Updated this week
- MaxQuant Automated Pipeline☆22Updated 4 years ago
- Network mapping tool for metabolomics + data.☆50Updated 9 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 4 months ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 8 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆100Updated 2 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community☆52Updated 4 months ago
- ☆58Updated 10 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated 3 weeks ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆23Updated last year
- 😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎☆133Updated 4 months ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆112Updated 3 months ago
- Disease Ontology Semantic and Enrichment analysis☆119Updated 4 months ago