Collection of scripts that include programmatic io and control of Cytoscape
☆92Jun 30, 2026Updated last month
Alternatives and similar repositories for cytoscape-automation
Users that are interested in cytoscape-automation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- Python library for calling Cytoscape Automation via CyREST☆87Feb 3, 2026Updated 6 months ago
- New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community☆59Dec 3, 2025Updated 8 months ago
- Cytoscape App Store web application code☆20Updated this week
- Collection of modular Cytoscape tutorials for online presentation using reveal.js☆332Jul 11, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python utilities for Cytoscape and Cytoscape.js☆176Feb 21, 2022Updated 4 years ago
- R package for WikiPathways API☆20Nov 3, 2025Updated 9 months ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 4 months ago
- Cytoscape.js based network visualizer for Jupyter Notebook☆37Jan 4, 2023Updated 3 years ago
- Network visualization webapp.☆14Mar 6, 2023Updated 3 years ago
- Read, write and format Excel files using R☆15Sep 29, 2025Updated 10 months ago
- ☆11Oct 23, 2025Updated 9 months ago
- ConsensusTME Gene Sets and R Script☆41Jun 6, 2024Updated 2 years ago
- Cytoscape 3 API bundles.☆26May 2, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆11Jun 16, 2022Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Cytoscape 3 sample code for App developers.☆23Jul 7, 2025Updated last year
- GitHub pages for GPML-Repo☆12Updated this week
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- My notes/usage examples for various Bioconductor packages☆15Jan 9, 2017Updated 9 years ago
- Tool for reliability assessment of omics peprocessing☆12Jan 13, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- Cytoscape: an open source platform for network analysis and visualization☆725Updated this week
- The R Bioconductor package for scMAGeCK.☆13Jul 10, 2026Updated last month
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆28Aug 21, 2024Updated last year
- A Cytoscape Jupyter widget☆290Jul 6, 2026Updated last month
- Computational biology utility scripts☆19Apr 16, 2025Updated last year
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- A Cytoscape.js extension for the hierarchical clustering algorithm☆10Jul 26, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆22Aug 7, 2024Updated 2 years ago
- Jupyter lab widget for rendering graphs (networks)☆24Oct 18, 2022Updated 3 years ago
- Connect the dots in networks.☆22Aug 28, 2020Updated 5 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- MeSH Enrichment and Semantic analyses☆13Jun 30, 2026Updated last month
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- Code for the Recount project☆11Dec 13, 2024Updated last year