cytoscape / cytoscape-automation
Collection of scripts that include programmatic io and control of Cytoscape
☆81Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for cytoscape-automation
- Python library for calling Cytoscape Automation via CyREST☆72Updated last week
- A BioJS viewer for protein sequence features☆49Updated last year
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆42Updated 8 months ago
- MyGene.info: A BioThings API for gene annotations☆117Updated 3 weeks ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆108Updated last week
- A python package for pathway visualization☆38Updated 4 years ago
- A Python implementation of edgeR for differential expression analysis☆96Updated 5 years ago
- Python biomart API☆63Updated last year
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆83Updated 2 years ago
- Parsing tools for GTF (gene transfer format) files☆110Updated 7 months ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆148Updated 2 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆134Updated this week
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆57Updated this week
- IPAW: a Nextflow workflow for proteogenomics☆25Updated 3 months ago
- Python interface to amino acid properties and IEDB☆49Updated last month
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- A Python library for interacting with the Galaxy API☆85Updated 2 weeks ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆128Updated 3 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 2 years ago
- GO enrichment with python -- pandas meets networkx☆87Updated 4 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆25Updated 6 years ago
- Create force-directed graphs of RNA secondary structures.☆100Updated 4 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆78Updated last month
- A catalog of appyter notebooks☆35Updated 3 weeks ago
- The MPI Bioinformatics Toolkit☆63Updated 2 months ago
- biotoolsregistry : discovery portal for bioinformatics☆70Updated this week
- ☆54Updated 6 months ago