cytoscape / cytoscape-automation

Related projects: ⓘ

• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆115Updated last week
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 3 years ago
• cytoscape / py4cytoscape
  Python library for calling Cytoscape Automation via CyREST
  ☆69Updated 2 weeks ago
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆46Updated last year
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆96Updated 5 years ago
• sebriois / biomart
  Python biomart API
  ☆61Updated last year
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆54Updated 4 years ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆107Updated last month
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 2 years ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆61Updated 3 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆134Updated 2 months ago
• GeneMANIA / genemania
  GeneMANIA helps you predict the function of your favourite genes and gene sets.
  ☆41Updated 6 months ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆82Updated 2 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆49Updated 3 months ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆55Updated 3 weeks ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆24Updated last month
• calipho-sib / feature-viewer
  Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project
  ☆110Updated 2 weeks ago
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆85Updated last month
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆128Updated last month
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated last year
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆224Updated 2 months ago
• bgruening / galaxytools
  Galaxy Tool wrappers
  ☆116Updated last week
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆51Updated 7 months ago
• guma44 / GEOparse
  Python library to access Gene Expression Omnibus Database (GEO)
  ☆137Updated last month
• baryshnikova-lab / safepy
  Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
  ☆38Updated 7 months ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆25Updated 6 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆87Updated 4 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆41Updated 8 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆95Updated 2 years ago