cytoscape / cytoscape-automationLinks
Collection of scripts that include programmatic io and control of Cytoscape
☆87Updated 3 months ago
Alternatives and similar repositories for cytoscape-automation
Users that are interested in cytoscape-automation are comparing it to the libraries listed below
Sorting:
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆115Updated 6 months ago
- Python biomart API☆65Updated last year
- A BioJS viewer for protein sequence features☆49Updated 2 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆27Updated 7 years ago
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆42Updated last year
- MyGene.info: A BioThings API for gene annotations☆126Updated last week
- A python package for pathway visualization☆38Updated 4 years ago
- Python interface to amino acid properties and IEDB☆56Updated 7 months ago
- API for linked biological knowledge☆64Updated 3 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆90Updated 4 months ago
- biotoolsregistry : discovery portal for bioinformatics☆77Updated 2 weeks ago
- Grammar of Scalable Linked Interactive Nucleotide Graphics☆177Updated last month
- Jupyter notebook based genomic data visualization toolkit.☆237Updated last month
- MyVariant.info: A BioThings API for human variant annotations☆95Updated 2 weeks ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆143Updated this week
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated this week
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Robust statistical inference for quantitative LC-MS proteomics☆33Updated 2 years ago
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆59Updated last year
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆131Updated 10 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- Collection of modular Cytoscape tutorials for online presentation using reveal.js☆315Updated 3 weeks ago
- A Python library for interacting with the Galaxy API☆90Updated this week
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆93Updated last week
- An RNA manipulation library.☆56Updated last year
- Materials for a workshop introducing machine learning to biologists☆22Updated 2 months ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated 9 months ago
- A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)☆33Updated 5 years ago