Python utilities for Cytoscape and Cytoscape.js
☆176Feb 21, 2022Updated 4 years ago
Alternatives and similar repositories for py2cytoscape
Users that are interested in py2cytoscape are comparing it to the libraries listed below
Sorting:
- Core App: REST API module for Cytoscape☆31Jul 31, 2025Updated 7 months ago
- Cytoscape.js based network visualizer for Jupyter Notebook☆37Jan 4, 2023Updated 3 years ago
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- Collection of scripts that include programmatic io and control of Cytoscape☆90Feb 19, 2025Updated last year
- Jupyter lab widget for rendering graphs (networks)☆24Oct 18, 2022Updated 3 years ago
- A Cytoscape.js extension for the hierarchical clustering algorithm☆10Jul 26, 2017Updated 8 years ago
- cyREST examples for Python users.☆11Feb 20, 2018Updated 8 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- A Cytoscape Jupyter widget☆288Jan 5, 2026Updated 2 months ago
- visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells☆78Aug 15, 2023Updated 2 years ago
- numpy based SOM Library☆10Sep 5, 2016Updated 9 years ago
- A python module for the clustergrammer matrix visualization project that creates the JSON object for the front-end JavaScript portion of …☆12May 5, 2021Updated 4 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 8 years ago
- Access to Biological Web Services from Python.☆329Mar 2, 2026Updated last week
- A suite of Dash components for JBrowse's embeddable components☆14Jan 3, 2024Updated 2 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆400Aug 13, 2025Updated 6 months ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Jul 11, 2017Updated 8 years ago
- Interactive network visualization in Python and Dash, powered by Cytoscape.js☆668Aug 9, 2025Updated 7 months ago
- LipidLynxX provides the possibility to convert, cross-match, and link various lipid annotations to the tools supporting lipid ontology, …☆16Feb 14, 2023Updated 3 years ago
- Cytoscape 3 implementation bundles.☆41Jan 1, 2026Updated 2 months ago
- A needle plot for mutation data☆27Aug 31, 2017Updated 8 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- Draw interactive NetworkX graphs with Altair☆227Sep 27, 2023Updated 2 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- An R/shiny widget for cytoscape.js☆97Aug 6, 2024Updated last year
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- a Graph database and R package for omic data integration☆19Oct 28, 2016Updated 9 years ago
- JavaScript-based pathway viewer and editor☆35Feb 20, 2025Updated last year
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Jul 22, 2023Updated 2 years ago
- ☆21Jul 4, 2017Updated 8 years ago
- A Cytoscape.js extension to import from and export to GraphML format☆32Mar 19, 2025Updated 11 months ago
- A web application to visualize and edit pathway models☆59Updated this week
- sequence alignment. global, local, glocal.☆42Dec 21, 2016Updated 9 years ago
- Connect the dots in networks.☆20Aug 28, 2020Updated 5 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Dec 27, 2018Updated 7 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Dec 10, 2020Updated 5 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 4 months ago
- Static website generator for sciencey people☆30Feb 7, 2024Updated 2 years ago