Python utilities for Cytoscape and Cytoscape.js
☆176Feb 21, 2022Updated 4 years ago
Alternatives and similar repositories for py2cytoscape
Users that are interested in py2cytoscape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Core App: REST API module for Cytoscape☆31Jul 31, 2025Updated last year
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- Cytoscape.js based network visualizer for Jupyter Notebook☆37Jan 4, 2023Updated 3 years ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Jul 11, 2017Updated 9 years ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Jupyter lab widget for rendering graphs (networks)☆24Oct 18, 2022Updated 4 years ago
- A Cytoscape Jupyter widget☆291Oct 5, 2026Updated 3 weeks ago
- Connect the dots in networks.☆22Aug 28, 2020Updated 6 years ago
- A python module for the clustergrammer matrix visualization project that creates the JSON object for the front-end JavaScript portion of …☆12May 5, 2021Updated 5 years ago
- visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells☆78Aug 15, 2023Updated 3 years ago
- cyREST examples for Python users.☆11Feb 20, 2018Updated 8 years ago
- A Cytoscape.js extension to import from and export to GraphML format☆32Mar 19, 2025Updated last year
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆410Updated this week
- A suite of Dash components for JBrowse's embeddable components☆14Jul 22, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- A needle plot for mutation data☆27Aug 31, 2017Updated 9 years ago
- Euler is a fast, high-quality force-directed (physics simulation) layout for Cytoscape.js☆32May 5, 2026Updated 5 months ago
- Interactive network visualization in Python and Dash, powered by Cytoscape.js☆679Aug 9, 2025Updated last year
- A web application to visualize and edit pathway models☆63Updated this week
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- An R/shiny widget for cytoscape.js☆97Aug 6, 2024Updated 2 years ago
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 3 years ago
- ☆12Aug 30, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Cytoscape 3 implementation bundles.☆43Oct 8, 2026Updated 2 weeks ago
- Draw interactive NetworkX graphs with Altair☆228Sep 27, 2023Updated 3 years ago
- LipidLynxX provides the possibility to convert, cross-match, and link various lipid annotations to the tools supporting lipid ontology, …☆17Feb 14, 2023Updated 3 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 10 years ago
- ☆11Jun 8, 2018Updated 8 years ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Apr 12, 2023Updated 3 years ago
- Cytoscape 3 sample code for App developers.☆23Jul 7, 2025Updated last year
- This is the repository for the variant impact predictor VarIpred.☆11May 2, 2024Updated 2 years ago
- JavaScript-based pathway viewer and editor☆38Feb 20, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated 4 months ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- KnetMiner - webapp to search and visualize genome-scale knowledge graphs☆33Aug 26, 2026Updated 2 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆67May 12, 2021Updated 5 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆18Jul 5, 2019Updated 7 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 6 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 11 years ago