cytoscape / py2cytoscape
Python utilities for Cytoscape and Cytoscape.js
☆178Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for py2cytoscape
- Hive Plots in using Python & matplotlib!☆70Updated 6 years ago
- visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells☆78Updated last year
- Collection of scripts that include programmatic io and control of Cytoscape☆81Updated 2 months ago
- Cytoscape.js based network visualizer for Jupyter Notebook☆38Updated last year
- The Clustergrammer interactive Jupyter notebook widget☆47Updated last year
- A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.☆314Updated 6 years ago
- An embeddable webGL graph visualization library.☆133Updated 6 years ago
- Python client for the lightning API☆165Updated 6 years ago
- Jupyter lab widget for rendering graphs (networks)☆24Updated 2 years ago
- A Cytoscape Jupyter widget☆270Updated last month
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 6 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆173Updated 3 years ago
- Analyze Data with Pandas-based Networks. Documentation:☆285Updated 2 months ago
- An interactive heatmap visualization built using D3.js☆230Updated last year
- Core App: REST API module for Cytoscape☆30Updated last year
- Pilot to work with dynamic visualization by using python☆59Updated 4 years ago
- OBO-formatted ontologies → networkx (Python 3)☆136Updated 4 months ago
- Visualization Package for NetworkX☆457Updated 2 months ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 4 years ago
- A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and mod…☆334Updated last year
- Reproducible machine learning analysis of gene expression and alternative splicing data☆123Updated last year
- ggplot2 syntax in python. Actually wrapper around Wickham's ggplot2 in R☆73Updated 3 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago
- A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overla…☆139Updated 3 years ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆116Updated last year
- D3 JavaScript networkx Graphs in Python☆51Updated 7 years ago
- Draw interactive NetworkX graphs with Altair☆224Updated last year
- HiView: the universal viewer for hierarchical data☆16Updated last year
- Python library for calling Cytoscape Automation via CyREST☆71Updated last week
- cyREST examples for Python users.☆11Updated 6 years ago