Alternatives and similar repositories for py2cytoscape

Users that are interested in py2cytoscape are comparing it to the libraries listed below

• ericmjl / hiveplot
  Hive Plots in using Python & matplotlib!
  ☆71Updated 6 years ago
• ucsd-ccbb / visJS2jupyter
  visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells
  ☆78Updated 2 years ago
• MaayanLab / clustergrammer-widget
  The Clustergrammer interactive Jupyter notebook widget
  ☆47Updated 2 years ago
• ImSoErgodic / py-upset
  A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
  ☆319Updated 7 years ago
• cgat-developers / ruffus
  CGAT-ruffus is a lightweight python module for running computational pipelines
  ☆174Updated 4 years ago
• MaayanLab / clustergrammer
  An interactive heatmap visualization built using D3.js
  ☆235Updated 2 years ago
• cytoscape / cy-jupyterlab
  Jupyter lab widget for rendering graphs (networks)
  ☆24Updated 2 years ago
• themantalope / pydendroheatmap
  A tool for generating heatmaps from hierarchically clustered data.
  ☆40Updated 7 years ago
• patrickfuller / jgraph
  An embeddable webGL graph visualization library.
  ☆135Updated 7 years ago
• Jverma / NetworkxD3
  D3 JavaScript networkx Graphs in Python
  ☆50Updated 7 years ago
• PythonCharmers / starborn
  Starborn: Seaborn-compatible data visualization for Python based on Altair
  ☆50Updated 7 years ago
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆118Updated 2 years ago
• cytoscape / cytoscape-jupyter-widget
  Cytoscape.js based network visualizer for Jupyter Notebook
  ☆37Updated 2 years ago
• althonos / pronto
  A Python frontend to (Open Biomedical) Ontologies.
  ☆242Updated 5 months ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 5 years ago
• biokit / biokit
  Bioinformatics in Python
  ☆59Updated last year
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆126Updated 2 years ago
• cytoscape / cytoscape-automation
  Collection of scripts that include programmatic io and control of Cytoscape
  ☆88Updated 6 months ago
• roryk / ipython-cluster-helper
  Tool to easily start up an IPython cluster on different schedulers.
  ☆146Updated 5 years ago
• sirrice / pygg
  ggplot2 syntax in python. Actually wrapper around Wickham's ggplot2 in R
  ☆71Updated 4 years ago
• cytoscape / ipycytoscape
  A Cytoscape Jupyter widget
  ☆283Updated last month
• Zsailer / nx_altair
  Draw interactive NetworkX graphs with Altair
  ☆226Updated last year
• ericmjl / nxviz
  Visualization Package for NetworkX
  ☆473Updated 5 months ago
• vatlab / sos
  SoS workflow system for daily data analysis
  ☆279Updated 10 months ago
• hms-dbmi / upset-altair-notebook
  Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
  ☆31Updated 3 years ago
• pharmbio / sciluigi
  A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and mod…
  ☆335Updated 8 months ago
• lightning-viz / lightning-python
  Python client for the lightning API
  ☆166Updated 7 years ago
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 3 years ago
• scikit-bio / scikit-bio-cookbook
  Recipes for bioinformatics analyses with scikit-bio
  ☆42Updated 9 years ago
• VCG / upset
  UpSet - Visualizing Intersecting Sets
  ☆237Updated 3 years ago