Core App: REST API module for Cytoscape
☆31Jul 31, 2025Updated last year
Alternatives and similar repositories for cyREST
Users that are interested in cyREST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cytoscape 3 API bundles.☆26Aug 15, 2026Updated 2 weeks ago
- Cytoscape 3 desktop version.☆17Aug 24, 2026Updated last week
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community☆59Dec 3, 2025Updated 9 months ago
- Euler is a fast, high-quality force-directed (physics simulation) layout for Cytoscape.js☆32May 5, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- cyREST examples for Python users.☆11Feb 20, 2018Updated 8 years ago
- Collection of scripts that include programmatic io and control of Cytoscape☆92Jun 30, 2026Updated 2 months ago
- Cytoscape.js based network visualizer for Jupyter Notebook☆37Jan 4, 2023Updated 3 years ago
- A Cytoscape.js extension for the hierarchical clustering algorithm☆10Jul 26, 2017Updated 9 years ago
- ☆11Oct 23, 2025Updated 10 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago
- Biological file format specimens for testing packages, and functions to assist in testing.☆16Nov 18, 2025Updated 9 months ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST☆16Feb 3, 2018Updated 8 years ago
- The source of packages.red-data-tools.org☆13Apr 27, 2026Updated 4 months ago
- A Cytoscape.js extension to overlay a graph (network) on top of a Leaflet map☆13Jan 13, 2024Updated 2 years ago
- Network visualization webapp.☆14Mar 6, 2023Updated 3 years ago
- Python library for calling Cytoscape Automation via CyREST☆87Feb 3, 2026Updated 7 months ago
- Python wrapper for the GR framework☆32Mar 24, 2026Updated 5 months ago
- ☆16Dec 11, 2018Updated 7 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 6 years ago
- This repository provides an implementation of the DTi2Vec tool, to identify Drug-Target interaction using network embedding and ensemble …☆12Sep 28, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Processing and analysis of data coming from Illumina sequencing machines☆11Aug 20, 2026Updated 2 weeks ago
- Generating graph structures from OWL ontologies☆12Nov 21, 2017Updated 8 years ago
- my .bashrc and related files☆16Aug 17, 2026Updated 2 weeks ago
- Cytoscape App Store web application code☆20Aug 27, 2026Updated last week
- Visualization of clustered, faceted and pivoted search results from Apache Solr☆15May 24, 2011Updated 15 years ago
- An R/shiny widget for cytoscape.js☆98Aug 6, 2024Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 9 years ago
- Multiple sequence alignment browser☆12Dec 12, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bird's eye view pan and zoom control for Cytoscape.js.☆70Mar 13, 2024Updated 2 years ago
- openBD Chrome Extension☆11Feb 7, 2017Updated 9 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- A library for compressing, encrypting, and querying alignment data.☆15Jul 6, 2016Updated 10 years ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Jul 28, 2026Updated last month
- Collection of modular Cytoscape tutorials for online presentation using reveal.js☆336Jul 11, 2026Updated last month
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 6 years ago