menchelab / CartoGRAPHs
ā23Updated 10 months ago
Alternatives and similar repositories for CartoGRAPHs:
Users that are interested in CartoGRAPHs are comparing it to the libraries listed below
- topological data analysis of population-scale microbiomesā32Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)ā21Updated 3 years ago
- šŖ What's the latest version for each database?ā27Updated this week
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein iā¦ā21Updated last week
- Harmonizing pathway databases using Biological Expression Language (BEL)ā19Updated 8 months ago
- Data Integration tool utilizing network information for predictive analysesā16Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methodsā13Updated 4 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.ā28Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)ā27Updated 2 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologiesā18Updated 5 years ago
- Connect the dots in networks.ā18Updated 4 years ago
- Target prioritization using network representation learningā11Updated 3 years ago
- ā17Updated 3 months ago
- A project for exploring differentially active signaling paths related to proteomics datasetsā40Updated 5 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.ā25Updated 2 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)ā24Updated 2 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.ā15Updated 2 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq dataā7Updated 7 years ago
- HiDeF (Hierarchical community Decoding Framework)ā14Updated last year
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"ā26Updated last year
- code for Gogleva et al manuscriptā45Updated 2 years ago
- Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisynā12Updated last year
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingā32Updated 7 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)ā33Updated this week
- ā12Updated 3 years ago
- A Python package for gene network analysisā32Updated 2 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.ā70Updated 8 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.ā32Updated 8 months ago
- Draft cell type definitions from data - candidates for inclusion in CLā12Updated 2 months ago
- PyBioPAX: A python implementation of the BioPAX object modelā24Updated 10 months ago