Collection of modular Cytoscape tutorials for online presentation using reveal.js
☆326Nov 6, 2025Updated 4 months ago
Alternatives and similar repositories for cytoscape-tutorials
Users that are interested in cytoscape-tutorials are comparing it to the libraries listed below
Sorting:
- Cytoscape: an open source platform for network analysis and visualization☆686Sep 27, 2025Updated 5 months ago
- Collection of scripts that include programmatic io and control of Cytoscape☆90Feb 19, 2025Updated last year
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- Network annotation visualization☆18May 21, 2025Updated 9 months ago
- Core App: REST API module for Cytoscape☆31Jul 31, 2025Updated 7 months ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Oct 7, 2024Updated last year
- Out of date. Refer to https://blog.js.cytoscape.org/tutorials/☆38Jul 7, 2017Updated 8 years ago
- collection of notebooks with different cytoscape workflows☆50Mar 22, 2023Updated 2 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 4 months ago
- ☆13Feb 12, 2026Updated 3 weeks ago
- Cytoscape 3 implementation bundles.☆41Jan 1, 2026Updated 2 months ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Python library for calling Cytoscape Automation via CyREST☆85Feb 3, 2026Updated last month
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆230Aug 1, 2022Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- Simplify functional enrichment results☆124Jan 30, 2026Updated last month
- ☆22Nov 11, 2019Updated 6 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated last year
- Fostering open source collaboration with technical writers.☆10Aug 17, 2019Updated 6 years ago
- Multiscale embedded gene co-expression network analysis☆58Jan 9, 2024Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Cytoscape.js based network visualizer for Jupyter Notebook☆37Jan 4, 2023Updated 3 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆15Aug 20, 2021Updated 4 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Aug 30, 2021Updated 4 years ago
- ☆47Feb 17, 2020Updated 6 years ago
- Reactome Pathway Analysis☆45Dec 23, 2025Updated 2 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆311Feb 10, 2026Updated 3 weeks ago
- Python utilities for Cytoscape and Cytoscape.js☆176Feb 21, 2022Updated 4 years ago
- conserved non-coding sequence☆16Feb 21, 2022Updated 4 years ago
- ☆16Sep 13, 2024Updated last year
- Linear Models for Microarray Data☆12Apr 2, 2014Updated 11 years ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆14Nov 22, 2022Updated 3 years ago
- hands-on for NGS/SNParray CNV call trainning☆20Jun 13, 2022Updated 3 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆138Dec 15, 2022Updated 3 years ago