Alternatives and similar repositories for psm_utils:

Users that are interested in psm_utils are comparing it to the libraries listed below

• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆34Updated last week
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated 2 weeks ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated 2 weeks ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆18Updated last year
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆19Updated this week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated last month
• gtluu / timsconvert
  ☆35Updated 3 weeks ago
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆41Updated last month
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆13Updated 6 months ago
• pFindStudio / pGlyco3
  ☆17Updated last week
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated this week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated last month
• gagneurlab / spectralis
  ☆13Updated 4 months ago
• compomics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆54Updated this week
• mafreitas / tdf2mzml
  ☆25Updated last year
• BlaisProteomics / multiplierz
  The Multiplierz Proteomics Library
  ☆24Updated 9 months ago
• MannLabs / alphadia
  modular & open DIA search
  ☆61Updated this week
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆23Updated last year
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆31Updated this week
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆25Updated 3 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆45Updated last week
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆23Updated last week
• MannLabs / timsrust
  ☆25Updated 2 weeks ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆32Updated 9 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆49Updated 2 months ago
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated this week