Alternatives and similar repositories for gdc-client

Users that are interested in gdc-client are comparing it to the libraries listed below

• cpreid2 / gdc-rnaseq-tool
  Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
  ☆36Updated 5 years ago
• cBioPortal / datahub
  A centralized location for storing curated data from cBioPortal
  ☆196Updated this week
• NCI-GDC / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆61Updated last week
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆108Updated last year
• cBioPortal / oncotree
  ☆46Updated last week
• Sage-Bionetworks / synapsePythonClient
  Programmatic interface to Synapse services for Python
  ☆77Updated this week
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆30Updated last year
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• bioinform / neusomatic
  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
  ☆173Updated 3 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆56Updated 3 years ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆49Updated 2 years ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆55Updated 2 years ago
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆122Updated 6 years ago
• Google-Health / genomics-research
  ☆151Updated 10 months ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆129Updated 3 months ago
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆127Updated last year
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆72Updated 5 years ago
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆69Updated last month
• guma44 / GEOparse
  Python library to access Gene Expression Omnibus Database (GEO)
  ☆158Updated last year
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆115Updated last year
• jacoblevine / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆141Updated 5 years ago
• qalid7 / compath
  deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…
  ☆52Updated 5 years ago
• SBU-BMI / quip_distro
  ☆32Updated last year
• fsct135 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆21Updated 4 years ago
• ratschlab / DeepSpot
  DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images
  ☆61Updated last month
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆119Updated 6 months ago
• mikessh / vdjtools
  [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data
  ☆142Updated last year
• broadinstitute / mutect
  MuTect -- Accurate and sensitive cancer mutation detection
  ☆101Updated 2 years ago