GDC Data Transfer Tool
☆157Jun 10, 2025Updated last year
Alternatives and similar repositories for gdc-client
Users that are interested in gdc-client are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Translation layer between the GDC Data Dictionary and psqlgraph☆28Jun 27, 2025Updated last year
- Library for graph-like storage in postgresql using sqlalchemy☆24Oct 21, 2025Updated 9 months ago
- Data dictionary for the GDC☆56May 18, 2026Updated 2 months ago
- Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons☆31Oct 11, 2018Updated 7 years ago
- Official repository for GDC User Guides in Markdown format☆68Jun 18, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TCGA-Assembler 2☆77Jun 4, 2018Updated 8 years ago
- TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/☆38Aug 2, 2021Updated 4 years ago
- GDC Data Portal UI☆18Jul 9, 2024Updated 2 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆104Feb 13, 2023Updated 3 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Spliced read mapper for RNA-Seq☆92Jul 9, 2023Updated 3 years ago
- ☆69Jun 21, 2022Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- v2.x of the microassembly based somatic variant caller☆29Jun 30, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated 2 months ago
- Official repository for GDC User Guides in Markdown format☆62Updated this week
- TCGAbiolinks☆352Oct 7, 2025Updated 9 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆565Updated this week
- Genome browser to visualize and analyze genomic data☆14Nov 22, 2021Updated 4 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆498Feb 25, 2026Updated 4 months ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆15Sep 23, 2025Updated 9 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆167Mar 28, 2023Updated 3 years ago
- GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images -…☆13Aug 24, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A fast Python library for VCF files leveraging Cython for speed.☆53Mar 27, 2018Updated 8 years ago
- Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for pre…☆15Jul 13, 2026Updated last week
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆15Jul 23, 2020Updated 5 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆50Jun 30, 2023Updated 3 years ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆37May 18, 2020Updated 6 years ago
- Data portal for submitting and viewing genomic data☆14Mar 5, 2026Updated 4 months ago
- Test data for MultiQC.☆24May 12, 2026Updated 2 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Spatial Expression-Aligned Learning to improve pathology foundation models☆48Feb 17, 2026Updated 5 months ago
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆88Jul 6, 2026Updated 2 weeks ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆755Jul 4, 2026Updated 2 weeks ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Mar 16, 2025Updated last year
- Near-optimal RNA-Seq quantification☆767Jul 12, 2026Updated last week
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19May 28, 2020Updated 6 years ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Jul 9, 2026Updated last week