cpreid2 / gdc-rnaseq-toolLinks
Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
☆35Updated 5 years ago
Alternatives and similar repositories for gdc-rnaseq-tool
Users that are interested in gdc-rnaseq-tool are comparing it to the libraries listed below
Sorting:
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- TCGA-Assembler 2☆76Updated 7 years ago
- ☆61Updated 4 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆119Updated 6 years ago
- Python API for Xena Hub☆52Updated 2 years ago
- Scripts to analyze TCGA data☆120Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- ☆55Updated 2 years ago
- ☆58Updated 2 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆65Updated 4 years ago
- CRC Subtyping Consortium☆12Updated 7 years ago
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Updated last year
- Immunology-related bioinformatics data and tools☆73Updated last year
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆103Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 6 months ago
- ☆59Updated 5 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆15Updated 3 years ago
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆50Updated last week
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆22Updated 3 years ago
- Deep Learning based cell composition analysis with Scaden.☆80Updated 7 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆45Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- ☆33Updated 4 months ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated this week
- ☆90Updated 4 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆25Updated 6 months ago
- Relative Expression Ordering Analysis (REOA) package☆20Updated 2 years ago
- ☆69Updated last year