Alternatives and similar repositories for gdc-rnaseq-tool

Users that are interested in gdc-rnaseq-tool are comparing it to the libraries listed below

• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆128Updated last year
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆122Updated 6 years ago
• cBioPortal / datahub
  A centralized location for storing curated data from cBioPortal
  ☆198Updated last week
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆56Updated 3 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆96Updated 5 years ago
• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆259Updated 5 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆109Updated last year
• cantinilab / momix-notebook
  ☆66Updated 2 years ago
• fsct135 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆21Updated 4 years ago
• scverse / scanpy_usage
  Scanpy use cases.
  ☆88Updated 5 years ago
• NCI-GDC / gdc-client
  GDC Data Transfer Tool
  ☆154Updated 7 months ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆151Updated 11 months ago
• BioinformaticsFMRP / TCGAbiolinks
  TCGAbiolinks
  ☆342Updated 3 months ago
• jacoblevine / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆141Updated 5 years ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆228Updated last year
• mematt / ml4calibrated450k
  This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…
  ☆23Updated 3 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆140Updated 2 years ago
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆88Updated last year
• mskcc / RNAseqDB
  ☆144Updated 7 years ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 8 months ago
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆37Updated 4 years ago
• rezakj / iCellR
  iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …
  ☆128Updated 2 months ago
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆85Updated 2 years ago
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆100Updated 9 years ago
• czbiohub-sf / tabula-muris-senis
  Tabula Muris Senis
  ☆108Updated 2 years ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆98Updated 6 years ago
• urmi-21 / COVID-19-RNA-Seq-datasets
  A repository for sharing information on available COVID-19 RNA-Seq datasets
  ☆81Updated 3 years ago
• eiriniar / CellCnn
  Representation Learning for detection of phenotype-associated cell subsets
  ☆66Updated 5 years ago
• YosefLab / VISION
  Signature Analysis and Visualization for Single-Cell RNA-seq
  ☆175Updated last year