Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
☆36May 18, 2020Updated 5 years ago
Alternatives and similar repositories for gdc-rnaseq-tool
Users that are interested in gdc-rnaseq-tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python utilities for building integrated views of TCGA data.☆32Mar 25, 2018Updated 8 years ago
- TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/☆37Aug 2, 2021Updated 4 years ago
- TCGA-Assembler 2☆77Jun 4, 2018Updated 7 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- TCGA data downloader☆16Oct 10, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 7 years ago
- some short but practical PERL script in NGS data analysis☆16Oct 30, 2017Updated 8 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆24Apr 3, 2025Updated last year
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Javascript library for visualizing OncoGrids and related tracks☆26Aug 14, 2020Updated 5 years ago
- Android app for the Docker Remote API☆10Feb 22, 2016Updated 10 years ago
- Postgres plays with PGbouncer and Repmgr for replication/auto-failover☆10Aug 23, 2016Updated 9 years ago
- TCGAbiolinks☆348Oct 7, 2025Updated 6 months ago
- ☆18Oct 10, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Download, integration and visualizations of the variety & volume of TCGA data.☆52Oct 28, 2022Updated 3 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆13Jan 25, 2016Updated 10 years ago
- Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons☆31Oct 11, 2018Updated 7 years ago
- ☆10Feb 21, 2017Updated 9 years ago
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆25Oct 11, 2021Updated 4 years ago
- Individual Coefficient Approximation for Risk Estimation (ICARE) model☆18Sep 9, 2023Updated 2 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated 2 years ago
- This R code implements the GSPPCA algorithm for high-dimensional unsupervised feature selection.☆10Jul 29, 2025Updated 8 months ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Apr 28, 2016Updated 9 years ago
- Mongoose.js driver for Cycle.js.☆11Sep 28, 2016Updated 9 years ago
- ☆10Mar 26, 2026Updated 3 weeks ago
- Workflow for single-cell RNA-seq analysis using Seurat☆51Jan 14, 2024Updated 2 years ago
- Bio-dockers: dockerized bioinformatic tools☆32Aug 6, 2025Updated 8 months ago
- manage a repository of 0install feeds☆18Apr 6, 2026Updated 2 weeks ago
- Fusion strategies to build multimodal predictors for the prediction of immunotherapy response in non-small cell lung cancer☆16Jan 13, 2025Updated last year
- Scripts to analyze TCGA data☆134Mar 16, 2024Updated 2 years ago
- Documentation on extending Cloud Foundry☆13Apr 10, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Classical Bowling Kata using Functional Responsive Programming Using RxJS 5 and Cycle.js. A running version of the application can be fo…☆12Aug 10, 2016Updated 9 years ago
- A tutorial for Creating, Retrieving, Appending and Burning assets on BigchainDB☆12Dec 12, 2018Updated 7 years ago
- Youtube companion (https://www.youtube.com/watch?v=1Mt7EuVJf1A&feature=youtu.be) - Brief introduction to the SMOTE R package to super-sam…☆11Aug 19, 2014Updated 11 years ago
- 命例☆10Sep 27, 2018Updated 7 years ago
- ☆10Dec 5, 2022Updated 3 years ago
- A module for storing the ever-increasing sequence files when following couchdb _changes feeds.☆18Jan 14, 2026Updated 3 months ago
- Computational framework for dataset integration☆11Jul 21, 2023Updated 2 years ago