cpreid2 / gdc-rnaseq-tool

Related projects ⓘ

Alternatives and complementary repositories for gdc-rnaseq-tool

• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆74Updated 6 years ago
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆115Updated 8 months ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆50Updated last year
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆119Updated 5 years ago
• Hua0113 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆21Updated 3 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆89Updated 4 months ago
• srp33 / TCGA_RNASeq_Clinical
  ☆60Updated 4 years ago
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆65Updated 4 years ago
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆76Updated 11 months ago
• cantinilab / momix-notebook
  ☆62Updated last year
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆73Updated 2 weeks ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆46Updated last year
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆49Updated this week
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆109Updated 2 years ago
• mematt / ml4calibrated450k
  This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…
  ☆20Updated 2 years ago
• AI4SCR / ATHENA
  ☆31Updated last month
• mskcc / RNAseqDB
  ☆140Updated 6 years ago
• giannimonaco / ABIS
  ☆58Updated 4 years ago
• SpatialTranscriptomicsResearch / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆81Updated 3 years ago
• ebecht / MCPcounter
  ☆54Updated 2 years ago
• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆84Updated 3 weeks ago
• ELELAB / TCGAbiolinks_examples
  repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks
  ☆14Updated 2 years ago
• rezakj / iCellR
  Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…
  ☆121Updated 4 months ago
• Vivianstats / scImpute
  Accurate and robust imputation of scRNA-seq data
  ☆92Updated 5 years ago
• scverse / scanpy_usage
  Scanpy use cases.
  ☆77Updated 4 years ago
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆35Updated 3 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆35Updated 4 years ago
• Sage-Bionetworks / crcsc
  CRC Subtyping Consortium
  ☆12Updated 6 years ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆51Updated 3 years ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆65Updated 6 years ago