cpreid2 / gdc-rnaseq-tool

Related projects: ⓘ

• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆74Updated 6 years ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆44Updated 10 months ago
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆118Updated 5 years ago
• srp33 / TCGA_RNASeq_Clinical
  ☆60Updated 4 years ago
• Hua0113 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆20Updated 3 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆48Updated last year
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆114Updated 6 months ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆65Updated 6 years ago
• mematt / ml4calibrated450k
  This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…
  ☆18Updated 2 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆43Updated 4 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆47Updated last year
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆71Updated 3 months ago
• ebecht / MCPcounter
  ☆52Updated 2 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆108Updated 2 years ago
• Vivianstats / scImpute
  Accurate and robust imputation of scRNA-seq data
  ☆91Updated 5 years ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆51Updated 3 years ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆148Updated last month
• ELELAB / TCGAbiolinks_examples
  repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks
  ☆14Updated 2 years ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆89Updated 4 years ago
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆74Updated 9 months ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆49Updated 2 months ago
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆42Updated last year
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 6 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆95Updated 2 years ago
• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆231Updated 3 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆39Updated 3 years ago
• 10XGenomics / single-cell-3prime-paper
  ☆83Updated 4 years ago
• Sage-Bionetworks / crcsc
  CRC Subtyping Consortium
  ☆12Updated 6 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆87Updated 2 months ago
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆64Updated 5 months ago