fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
☆51Sep 24, 2025Updated 7 months ago
Alternatives and similar repositories for decona
Users that are interested in decona are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- ☆33May 29, 2024Updated last year
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆131Jan 8, 2026Updated 4 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- creating reference databases for amplicon sequencing☆50Jan 13, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Updated this week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Oct 24, 2025Updated 6 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆41Oct 9, 2025Updated 7 months ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19May 12, 2026Updated last week
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆116Nov 20, 2023Updated 2 years ago
- PuntSeq - Chasing the microbial diversity of Cambridge's freshwater☆20Nov 12, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated 11 months ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 4 years ago
- Look Up Guild Information for Fungi in R☆23Mar 20, 2025Updated last year
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 9 months ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 9 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Apr 26, 2026Updated 3 weeks ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 13, 2026Updated last week
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 5 years ago
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆22Feb 23, 2026Updated 2 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- ☆23Apr 13, 2026Updated last month
- Sequence correction provided by ONT Research☆513Apr 8, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆23Feb 23, 2023Updated 3 years ago
- Introduction to statistics using R and Rstudio☆10Mar 18, 2021Updated 5 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Mar 16, 2026Updated 2 months ago
- REference Sequence annotation and CuRatIon Pipeline☆98May 11, 2026Updated last week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- finding conserved regions in highly diverse genomes☆16May 3, 2026Updated 2 weeks ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago