Alternatives and similar repositories for hssp

Users that are interested in hssp are comparing it to the libraries listed below

• cmbi / dssp
  The DSSP building software
  ☆43Updated last year
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆32Updated 6 years ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆82Updated 4 years ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆110Updated 2 years ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆51Updated 8 months ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆63Updated last month
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆95Updated last year
• RashmiKumari / g_mmpbsa
  MM-PBSA method for GROMACS. For full description, please visit homepage:
  ☆67Updated 2 months ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆114Updated last year
• gerdos / PyRAMA
  Python implementation of the Ramachandran plot
  ☆47Updated 5 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆66Updated 8 months ago
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆73Updated 3 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆155Updated 2 months ago
• Valdes-Tresanco-MS / AutoDockTools_py3
  Python3 translation of AutoDockTools
  ☆114Updated 11 months ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆152Updated last week
• ncbi / SSDraw
  ☆85Updated last year
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆84Updated 2 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆52Updated last month
• KULL-Centre / papers
  Material from papers from KULL centre
  ☆69Updated 11 months ago
• Electrostatics / pdb2pqr
  PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
  ☆146Updated 2 months ago
• freesasa / freesasa-python
  FreeSASA Python Module
  ☆54Updated last year
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆102Updated 8 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆136Updated 11 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆41Updated 2 years ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆131Updated last month
• dina-lab3D / CombFold
  ☆82Updated 7 months ago
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆32Updated last year
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆68Updated last month
• volkamerlab / opencadd
  A Python library for structural cheminformatics
  ☆99Updated 2 weeks ago