harmslab / pdbtoolsLinks
A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
☆177Updated 5 years ago
Alternatives and similar repositories for pdbtools
Users that are interested in pdbtools are comparing it to the libraries listed below
Sorting:
- Official repo of the modular BioExcel version of HADDOCK☆171Updated this week
- C-library for calculating Solvent Accessible Surface Areas☆147Updated last week
- Create DSSP and HSSP files☆89Updated 11 months ago
- Application to assign secondary structure to proteins☆202Updated last month
- Software for biomolecular electrostatics and solvation calculations☆105Updated 10 months ago
- Predict the binding affinity of protein-protein complexes from structural data☆138Updated 3 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆113Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆158Updated 4 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆105Updated 11 months ago
- ☆33Updated last year
- Antibody Numbering and Antigen Receptor ClassIfication☆221Updated last year
- Calculation of interatomic interactions in molecular structures☆75Updated 3 years ago
- A simple Python library to generate model peptides☆87Updated 4 years ago
- Predict the structure of immune receptor proteins☆144Updated 5 months ago
- Accurately speed up AutoDock Vina☆152Updated last year
- Set of useful HADDOCK utility scripts☆53Updated 10 months ago
- Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.☆26Updated 3 years ago
- ☆85Updated last year
- A dependency-free cross-platform swiss army knife for PDB files.☆419Updated 10 months ago
- Protein and nucleic acid validation service☆82Updated last year
- ☆117Updated 2 years ago
- Python implementation of the Ramachandran plot☆48Updated 5 years ago
- fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…☆361Updated 10 months ago
- P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.☆332Updated 3 weeks ago
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆121Updated last year
- Educational materials for, and related to, UC Irvine's Drug Discovery Computing Techniques course (PharmSci 175/275), currently taught by…☆153Updated 4 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆108Updated last year
- Protein folding in Pymol☆109Updated 5 months ago
- Let LLM run your MDs.☆215Updated 3 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆101Updated 2 months ago