Alternatives and similar repositories for pdbtools

Users that are interested in pdbtools are comparing it to the libraries listed below

• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆176Updated 2 months ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆221Updated this week
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆172Updated 4 months ago
• cmbi / hssp
  Create DSSP and HSSP files
  ☆94Updated last year
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆242Updated last week
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆125Updated last year
• gerdos / PyRAMA
  Python implementation of the Ramachandran plot
  ☆55Updated 6 months ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆122Updated last year
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆85Updated last week
• QVina / qvina
  Accurately speed up AutoDock Vina
  ☆159Updated 2 years ago
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆83Updated 11 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆138Updated 2 months ago
• akiyamalab / MEGADOCK
  An ultra-high-performance protein-protein docking for heterogeneous supercomputers
  ☆71Updated 2 years ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆138Updated 2 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆131Updated 2 years ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆94Updated 5 years ago
• volkamerlab / opencadd
  A Python library for structural cheminformatics
  ☆103Updated 2 months ago
• rlabduke / MolProbity
  Protein and nucleic acid validation service
  ☆93Updated last year
• RashmiKumari / g_mmpbsa
  MM-PBSA method for GROMACS. For full description, please visit homepage:
  ☆68Updated 8 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆113Updated 5 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆175Updated 4 months ago
• MengwuXiao / GetBox-PyMOL-Plugin
  A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.
  ☆117Updated 6 years ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆110Updated 2 weeks ago
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆181Updated this week
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆198Updated last month
• JoaoRodrigues / pdb-tools
  Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.
  ☆26Updated 3 years ago
• ncbi / SSDraw
  ☆87Updated 2 months ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆57Updated 4 months ago
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆183Updated 2 years ago
• speleo3 / pymol-psico
  Pymol ScrIpt COllection (PSICO)
  ☆64Updated 2 weeks ago