Alternatives and similar repositories for haddock3

Users that are interested in haddock3 are comparing it to the libraries listed below

• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆147Updated 5 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆237Updated last month
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆148Updated this week
• Kortemme-Lab / flex_ddG_tutorial
  ☆126Updated 3 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆119Updated 2 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆162Updated 2 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆159Updated 8 months ago
• ikalvet / heme_binder_diffusion
  ☆140Updated 2 months ago
• ChatMol / gromacs_copilot
  Let LLM run your MDs.
  ☆228Updated 2 weeks ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆326Updated last month
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆161Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆193Updated last month
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆227Updated 2 months ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆161Updated 6 months ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆203Updated 4 months ago
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆352Updated this week
• guyujun / pyrosetta-basic
  ☆173Updated 3 years ago
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆218Updated 2 weeks ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆163Updated last year
• DweipayanG / GROMACS-Protein-Ligand
  ☆55Updated 2 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆159Updated 2 weeks ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆237Updated last year
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆145Updated last year
• CAODH / SurfDock
  SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction
  ☆210Updated last week
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆112Updated last year
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆110Updated last week
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆99Updated 6 months ago
• Valdes-Tresanco-MS / AutoDockTools_py3
  Python3 translation of AutoDockTools
  ☆127Updated last year
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆164Updated 2 years ago
• QVina / qvina
  Accurately speed up AutoDock Vina
  ☆153Updated last year