Official repo of the modular BioExcel version of HADDOCK
☆275Sep 18, 2026Updated this week
Alternatives and similar repositories for haddock3
Users that are interested in haddock3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict the binding affinity of protein-protein complexes from structural data☆197Oct 3, 2025Updated 11 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆427Feb 26, 2026Updated 6 months ago
- User friendly and accurate binder design pipeline☆1,214Aug 12, 2026Updated last month
- Set of useful HADDOCK utility scripts☆57Sep 19, 2025Updated last year
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆408Sep 6, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Official repository of PXDesign☆259Dec 31, 2025Updated 8 months ago
- AlphaBind code + model accompanying pre-print☆94Jul 24, 2025Updated last year
- Official Implementation of IgGM☆228May 28, 2026Updated 3 months ago
- ☆532Mar 5, 2026Updated 6 months ago
- A dependency-free cross-platform swiss army knife for PDB files.☆457Jun 10, 2026Updated 3 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,057Aug 1, 2026Updated last month
- BoltzGen: Toward Universal Binder Design☆1,058May 28, 2026Updated 3 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆272Sep 9, 2026Updated last week
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆877Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Open Free Energy toolkit☆331Updated this week
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆173Oct 11, 2023Updated 2 years ago
- A fully open source biomolecular structure prediction model based on AlphaFold3☆874Updated this week
- PDBFixer fixes problems in PDB files☆672Mar 10, 2026Updated 6 months ago
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆255Sep 29, 2025Updated 11 months ago
- Inference code for RFdiffusion2☆443Apr 3, 2026Updated 5 months ago
- ☆31Aug 8, 2025Updated last year
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆90Sep 4, 2026Updated 2 weeks ago
- Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake,…☆715Jul 3, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official repository for the Boltz biomolecular interaction models☆4,211May 29, 2026Updated 3 months ago
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 3 months ago
- ☆635Feb 6, 2025Updated last year
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆135Oct 30, 2025Updated 10 months ago
- Improved antibody structure-based design using inverse folding☆176Dec 9, 2025Updated 9 months ago
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆965Sep 8, 2026Updated last week
- Structure prediction and design of proteins with noncanonical amino acids☆146Feb 1, 2026Updated 7 months ago
- Making Protein folding accessible to all!☆2,926Updated this week
- An accurate and trainable end-to-end protein-ligand docking framework☆149Mar 24, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- EvolveX, a de novo antibody computational design pipeline.☆24Sep 18, 2025Updated last year
- The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.☆470Updated this week
- AI model and framework for scoring antibody-antigen complexes☆28Jul 29, 2026Updated last month
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆100Aug 7, 2026Updated last month
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆117Apr 15, 2026Updated 5 months ago
- ☆86Oct 23, 2024Updated last year
- A generalized computational framework for biomolecular modeling.☆446Aug 20, 2026Updated 3 weeks ago