haddocking / haddock3Links
Official repo of the modular BioExcel version of HADDOCK
☆181Updated this week
Alternatives and similar repositories for haddock3
Users that are interested in haddock3 are comparing it to the libraries listed below
Sorting:
- Predict the binding affinity of protein-protein complexes from structural data☆144Updated this week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆159Updated 3 weeks ago
- Code for ColabDock paper☆144Updated 3 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆116Updated 2 years ago
- In silico directed evolution of peptide binders with AlphaFold☆230Updated last month
- Let LLM run your MDs.☆224Updated 4 months ago
- ☆123Updated 3 years ago
- Rifdock Library for Conformational Search☆160Updated last year
- Protein-ligand structure prediction☆226Updated 3 weeks ago
- Predict the structure of immune receptor proteins☆150Updated 6 months ago
- ☆137Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆184Updated 2 weeks ago
- Antibody Numbering and Antigen Receptor ClassIfication☆228Updated last year
- P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.☆344Updated 2 weeks ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆199Updated 3 months ago
- Masif seed paper repository☆157Updated 2 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆315Updated 2 weeks ago
- Accurately speed up AutoDock Vina☆153Updated last year
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆152Updated 5 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆108Updated last year
- Protein folding in Pymol☆109Updated 7 months ago
- Application to assign secondary structure to proteins☆206Updated last week
- ☆172Updated 3 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆105Updated 3 months ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆141Updated last year
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆205Updated last month
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- ☆193Updated 2 weeks ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆163Updated 2 years ago
- Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.☆108Updated last year