Alternatives and similar repositories for MolProbity

Users that are interested in MolProbity are comparing it to the libraries listed below

• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆98Updated 2 years ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆97Updated 8 months ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆138Updated 2 years ago
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆85Updated 2 weeks ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆125Updated last year
• RashmiKumari / g_mmpbsa
  MM-PBSA method for GROMACS. For full description, please visit homepage:
  ☆68Updated 8 months ago
• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆176Updated 2 months ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆65Updated 10 months ago
• KULL-Centre / papers
  Material from papers from KULL centre
  ☆71Updated last year
• maccallumlab / meld
  Modeling with limited data
  ☆60Updated last month
• DeltaGroupNJUPT / Vina-GPU-2.0
  Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.
  ☆114Updated 2 years ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆94Updated 5 years ago
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆47Updated last year
• dina-lab3D / CombFold
  ☆91Updated last year
• ccsb-scripps / ADCP
  AutoDock CrankPep for peptide and disordered protein docking
  ☆57Updated 3 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆175Updated 4 months ago
• tdudgeon / simple-simulate-complex
  Simple protein-ligand complex simulation with OpenMM
  ☆91Updated 2 years ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆119Updated last year
• Electrostatics / pdb2pqr
  PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
  ☆166Updated 2 months ago
• cmbi / hssp
  Create DSSP and HSSP files
  ☆94Updated last year
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆121Updated 10 months ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆39Updated 6 months ago
• freesasa / freesasa-python
  FreeSASA Python Module
  ☆59Updated 6 months ago
• KULL-Centre / CALVADOS
  ☆81Updated 3 weeks ago
• ChemBioHTP / EnzyHTP
  EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling
  ☆31Updated last week
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆36Updated last month
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆138Updated 2 months ago
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆79Updated 10 months ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆34Updated last month
• forlilab / Ringtail
  Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina
  ☆58Updated last week