Alternatives and similar repositories for apbs

Users that are interested in apbs are comparing it to the libraries listed below

• Electrostatics / pdb2pqr
  PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
  ☆160Updated last month
• RashmiKumari / g_mmpbsa
  MM-PBSA method for GROMACS. For full description, please visit homepage:
  ☆69Updated 6 months ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆133Updated 2 years ago
• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆166Updated 3 weeks ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆112Updated last year
• maccallumlab / meld
  Modeling with limited data
  ☆59Updated 5 months ago
• harryjubb / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆83Updated 3 years ago
• mwojcikowski / smina
  ☆133Updated 7 years ago
• QVina / qvina
  Accurately speed up AutoDock Vina
  ☆155Updated 2 years ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆89Updated 5 years ago
• KULL-Centre / papers
  Material from papers from KULL centre
  ☆71Updated last year
• rlabduke / reduce
  Reduce - tool for adding and correcting hydrogens in PDB files
  ☆159Updated 6 months ago
• rlabduke / MolProbity
  Protein and nucleic acid validation service
  ☆90Updated last year
• Valdes-Tresanco-MS / AMDock
  (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
  ☆74Updated 2 years ago
• cmbi / hssp
  Create DSSP and HSSP files
  ☆94Updated last year
• drorlab / pensa
  PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
  ☆145Updated 9 months ago
• MooersLab / pymolshortcuts
  The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…
  ☆84Updated 2 months ago
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆47Updated last year
• Valdes-Tresanco-MS / AutoDockTools_py3
  Python3 translation of AutoDockTools
  ☆130Updated last year
• volkamerlab / opencadd
  A Python library for structural cheminformatics
  ☆103Updated 3 weeks ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆98Updated 2 years ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆65Updated 8 months ago
• ccsb-scripps / ADCP
  AutoDock CrankPep for peptide and disordered protein docking
  ☆53Updated last month
• intbio / gromacs_ff
  Trusted force field files for gromacs
  ☆64Updated last year
• KULL-Centre / CALVADOS
  ☆78Updated last month
• DeltaGroupNJUPT / Vina-GPU-2.0
  Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.
  ☆112Updated 2 years ago
• abeebyekeen / CHAPERONg
  CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
  ☆57Updated 4 months ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆96Updated 6 months ago
• ChemBioHTP / EnzyHTP
  EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling
  ☆29Updated 2 weeks ago
• paiardin / DockingPie
  A Consensus Docking Plugin for PyMOL
  ☆79Updated last year