Alternatives and similar repositories for PymolFold

Users that are interested in PymolFold are comparing it to the libraries listed below

• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆162Updated 2 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 5 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆101Updated 6 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆119Updated 2 years ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆145Updated last year
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆126Updated 3 years ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆119Updated 2 weeks ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆149Updated this week
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆86Updated last week
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆69Updated last year
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆196Updated 2 months ago
• varun-shanker / structural-evolution
  ☆114Updated last year
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆64Updated last year
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆114Updated last year
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆93Updated 4 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆70Updated 3 years ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆74Updated last month
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆66Updated last month
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆113Updated 6 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆159Updated 8 months ago
• AlexanderKroll / ESP
  ☆74Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆53Updated last month
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆139Updated last month
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 6 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆59Updated 5 months ago
• ScorpioLea / AiCE
  Predicting high-fitness mutations based on protein inverse folding models
  ☆62Updated last week