PDB-REDO / dsspLinks
Application to assign secondary structure to proteins
☆206Updated last week
Alternatives and similar repositories for dssp
Users that are interested in dssp are comparing it to the libraries listed below
Sorting:
- Official repo of the modular BioExcel version of HADDOCK☆181Updated this week
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆315Updated 2 weeks ago
- Rifdock Library for Conformational Search☆160Updated last year
- P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.☆344Updated 2 weeks ago
- Antibody Numbering and Antigen Receptor ClassIfication☆228Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆159Updated last month
- In silico directed evolution of peptide binders with AlphaFold☆230Updated last month
- Predict the structure of immune receptor proteins☆150Updated 6 months ago
- Predict the binding affinity of protein-protein complexes from structural data☆144Updated this week
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆116Updated 2 years ago
- Protein folding in Pymol☆109Updated 7 months ago
- ☆123Updated 3 years ago
- A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files☆178Updated 5 years ago
- Compressing protein structures effectively with torsion angles☆174Updated 3 weeks ago
- fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…☆377Updated 11 months ago
- Interface for AutoDock, molecule parameterization☆269Updated last week
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆108Updated last year
- Protein-ligand structure prediction☆226Updated 3 weeks ago
- Code for ColabDock paper☆144Updated 3 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆154Updated 4 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆199Updated 3 months ago
- gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.☆271Updated last month
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆170Updated 2 years ago
- ☆197Updated 4 months ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆163Updated 11 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆184Updated 2 weeks ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆152Updated 5 months ago
- ChatMol☆234Updated 5 months ago
- Software for biomolecular electrostatics and solvation calculations☆106Updated 11 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆305Updated last year