PDB-REDO / dssp

Related projects ⓘ

Alternatives and complementary repositories for dssp

• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆224Updated 2 months ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆112Updated this week
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆135Updated 2 months ago
• Valdes-Tresanco-MS / gmx_MMPBSA
  gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
  ☆229Updated 2 weeks ago
• harmslab / pdbtools
  A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
  ☆170Updated 5 years ago
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆252Updated last week
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆143Updated 6 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆120Updated 4 months ago
• Discngine / fpocket
  fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…
  ☆299Updated 2 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆94Updated 2 years ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆188Updated 6 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆126Updated last month
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆99Updated last year
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆205Updated 3 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆90Updated last year
• ikalvet / heme_binder_diffusion
  ☆94Updated last month
• forlilab / Meeko
  Interface for AutoDock, molecule parameterization
  ☆204Updated this week
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆95Updated 3 months ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆122Updated 3 years ago
• guyujun / pyrosetta-basic
  ☆147Updated 3 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆152Updated 2 months ago
• jertubiana / ScanNet
  ☆118Updated last year
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆110Updated last month
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆109Updated last week
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆127Updated last month
• QVina / qvina
  Accurately speed up AutoDock Vina
  ☆131Updated last year
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆199Updated 6 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆137Updated last year
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆245Updated last year
• cmbi / hssp
  Create DSSP and HSSP files
  ☆83Updated 4 months ago