sokrypton / GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
☆53Updated 2 years ago
Alternatives and similar repositories for GREMLIN_CPP:
Users that are interested in GREMLIN_CPP are comparing it to the libraries listed below
- Repository for publicly available deep learning models developed in Rosetta community☆109Updated 3 years ago
- ☆97Updated 2 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆49Updated 3 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 4 months ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 2 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆55Updated 2 years ago
- Contact map alignment☆41Updated 3 years ago
- ☆77Updated 3 months ago
- ☆97Updated 2 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆82Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆141Updated 4 months ago
- ☆72Updated 2 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆75Updated 2 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆44Updated last month
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆107Updated last year
- ☆34Updated 3 years ago
- ☆102Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Official repo of the modular BioExcel version of HADDOCK☆121Updated this week
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆78Updated 4 years ago
- Tool for modelling the CDRs of antibodies☆47Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆102Updated last year
- A compilation of deep learning methods for protein design☆95Updated 2 years ago
- A simple Python library to generate model peptides☆80Updated 4 years ago
- ☆119Updated last year
- ☆104Updated 3 months ago
- Protein design and variant prediction using autoregressive generative models☆95Updated 11 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆135Updated 4 months ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆82Updated 3 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆44Updated 9 months ago