sokrypton / GREMLIN_CPPLinks
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
☆57Updated 3 years ago
Alternatives and similar repositories for GREMLIN_CPP
Users that are interested in GREMLIN_CPP are comparing it to the libraries listed below
Sorting:
- Repository for publicly available deep learning models developed in Rosetta community☆121Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Updated 3 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Updated 4 years ago
- ☆114Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- ☆108Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Updated 2 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Updated 2 years ago
- Contact map alignment☆41Updated 4 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆111Updated 2 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Updated 6 months ago
- ☆59Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆61Updated 3 weeks ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Protein folding in Pymol☆127Updated last month
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆59Updated 4 years ago
- trRosetta for protein design☆183Updated 4 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Updated 5 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆119Updated 2 years ago
- ☆88Updated last year
- ☆35Updated 4 years ago
- pyFoldX: python bindings for FoldX.☆53Updated 4 years ago
- Compressing protein structures effectively with torsion angles☆183Updated last week
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated last month
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆151Updated 2 years ago
- Create DSSP and HSSP files☆94Updated last year
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆130Updated 4 years ago