GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
☆59Oct 17, 2022Updated 3 years ago
Alternatives and similar repositories for GREMLIN_CPP
Users that are interested in GREMLIN_CPP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Apr 25, 2021Updated 4 years ago
- ☆33Sep 19, 2025Updated 6 months ago
- GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the fam…☆23Jul 3, 2016Updated 9 years ago
- Contact map alignment☆43Feb 3, 2021Updated 5 years ago
- functional genomic data integration☆10Sep 22, 2019Updated 6 years ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆114Nov 8, 2023Updated 2 years ago
- Contact map alignment☆16May 10, 2018Updated 7 years ago
- Generate A3M and TGT file from a given sequence in FASTA format.☆11Nov 16, 2020Updated 5 years ago
- ☆26May 9, 2022Updated 3 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- Tutorial files☆12Aug 7, 2024Updated last year
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 3 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Sep 13, 2020Updated 5 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- ☆20Feb 25, 2025Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 6 years ago
- ☆20Jul 16, 2021Updated 4 years ago
- ☆38Oct 16, 2024Updated last year
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21May 4, 2020Updated 5 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 6 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- Mono-repo for protein utilities.☆21Oct 26, 2021Updated 4 years ago
- Cryo-EM data viewer in napari☆14Dec 1, 2020Updated 5 years ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Nov 17, 2025Updated 4 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 6 years ago
- A protein 3D structure prediction application☆67May 5, 2021Updated 4 years ago
- PyMOL plugin to import Alphafold2 models hosted by EMBL, based on fetch-functionality☆22Mar 10, 2025Updated last year
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Sep 30, 2022Updated 3 years ago
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 6 years ago
- Predict protein local properties using sequence or profile information.☆23Nov 16, 2020Updated 5 years ago
- Scripts and data deposition for de novo heterodimers manuscript☆11Dec 15, 2018Updated 7 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 6 years ago
- ☆21Jul 16, 2020Updated 5 years ago
- Pseudo Likelihood Maximization for protein in Julia☆52May 15, 2025Updated 10 months ago
- ☆47Sep 16, 2024Updated last year
- Deep ResNet-based protein contact prediction☆20Mar 30, 2020Updated 5 years ago