Using traditional machine learning and deep learning methods to predict stuff from TCGA pathology slides.
☆18Sep 24, 2018Updated 7 years ago
Alternatives and similar repositories for pathology_learning
Users that are interested in pathology_learning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Path R-CNN: Object Detection and Segmentation on Pathology Image.☆17Sep 30, 2020Updated 5 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆30Sep 30, 2020Updated 5 years ago
- ☆14Mar 12, 2019Updated 7 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- ☆10Jul 9, 2024Updated last year
- Accurate encoding of histologic images into StyleGAN space for discovery and explainability☆13Oct 8, 2025Updated 7 months ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 癌症相关学习内容☆50Aug 9, 2019Updated 6 years ago
- Wessim: Whole Exome Sequencing SIMulator using in silico exome capture☆15Aug 18, 2020Updated 5 years ago
- SL5_AHK_Refactor_engine is a developer productivity engine for ahk developers with scite4ahk☆12Mar 21, 2018Updated 8 years ago
- 这是一个基于AutoDock-GPU的自动化批量对接程序，只需输入小分子的smiles结构文档（支持批量输入）并且提供蛋白质的网格文件（maps.fld）即可自动完成小分子预处理，分子对接，结果提取等步骤。This project is an automated batch…☆23Oct 13, 2025Updated 7 months ago
- Using Pubmed data and tf.keras to predict if an ophthalmology paper will make it into a top 15 journal☆10May 4, 2020Updated 6 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of scie…☆25Sep 28, 2015Updated 10 years ago
- ☆17Dec 9, 2019Updated 6 years ago
- R scripts to help with your flow cytometry analysis☆28Jun 17, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆50Apr 8, 2021Updated 5 years ago
- [MICCAI2023] XSurv: Merging-Diverging Hybrid Transformer Networks for Survival Prediction☆11Oct 2, 2023Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- ☆41Jul 14, 2023Updated 2 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 4 years ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12May 13, 2021Updated 5 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆21Mar 6, 2024Updated 2 years ago
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 3 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Chest Xray Classifier using CNNs and Transfer Learning. The jupyter notebook of interest is titled 'Xrays_alt.ipynb'☆11May 18, 2018Updated 8 years ago
- ☆14Dec 3, 2020Updated 5 years ago
- Highly parallel molecular docking pipeline using Vina-GPU (dockerized) + AutoDock Vina CPU☆17Nov 19, 2024Updated last year
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated 2 months ago
- A pan-cancer platform for mutation prediction from routine histology☆68May 23, 2021Updated 5 years ago
- Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…☆98Aug 17, 2021Updated 4 years ago
- Predicting breast cancer at 97.51% accuracy with Naive Bayes Classifier for learning purposes.☆13May 1, 2010Updated 16 years ago