Using traditional machine learning and deep learning methods to predict stuff from TCGA pathology slides.
☆18Sep 24, 2018Updated 7 years ago
Alternatives and similar repositories for pathology_learning
Users that are interested in pathology_learning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Path R-CNN: Object Detection and Segmentation on Pathology Image.☆17Sep 30, 2020Updated 5 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Full package for applying deep learning to virtual slides.☆72Sep 7, 2018Updated 7 years ago
- ☆10Apr 10, 2016Updated 9 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆30Sep 30, 2020Updated 5 years ago
- ☆14Mar 12, 2019Updated 7 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- Accurate encoding of histologic images into StyleGAN space for discovery and explainability☆13Oct 8, 2025Updated 5 months ago
- ☆10Jul 9, 2024Updated last year
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 6 months ago
- 癌症相关学习内容☆50Aug 9, 2019Updated 6 years ago
- Wessim: Whole Exome Sequencing SIMulator using in silico exome capture☆15Aug 18, 2020Updated 5 years ago
- 这是一个基于AutoDock-GPU的自动化批量对接程序,只需输入小分子的smiles结构文档(支持批量输入)并且提供蛋白质的网格文件(maps.fld)即可自动完成小分子预处理,分子对接,结果提取等步骤。This project is an automated batch…☆20Oct 13, 2025Updated 5 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of scie…☆25Sep 28, 2015Updated 10 years ago
- ☆17Dec 9, 2019Updated 6 years ago
- Automatic feature engineering using Generative Adversarial Networks using Deeplearning4j and Apache Spark.☆21Jul 15, 2022Updated 3 years ago
- R scripts to help with your flow cytometry analysis☆29Jun 17, 2022Updated 3 years ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆51Apr 8, 2021Updated 4 years ago
- ☆40Jul 14, 2023Updated 2 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12May 13, 2021Updated 4 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆20Mar 6, 2024Updated 2 years ago
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 3 years ago
- ☆14Dec 3, 2020Updated 5 years ago
- Chest Xray Classifier using CNNs and Transfer Learning. The jupyter notebook of interest is titled 'Xrays_alt.ipynb'☆11May 18, 2018Updated 7 years ago
- Highly parallel molecular docking pipeline using Vina-GPU (dockerized) + AutoDock Vina CPU☆17Nov 19, 2024Updated last year
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated last month
- A pan-cancer platform for mutation prediction from routine histology☆69May 23, 2021Updated 4 years ago
- Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…☆98Aug 17, 2021Updated 4 years ago
- Predicting breast cancer at 97.51% accuracy with Naive Bayes Classifier for learning purposes.☆13May 1, 2010Updated 15 years ago
- 🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing dat…☆23May 22, 2025Updated 10 months ago
- The source code for the new version of the EMBL-EBI BioSamples database