Alternatives and similar repositories for scEvalsJam

Users that are interested in scEvalsJam are comparing it to the libraries listed below

• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆17Updated 3 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆163Updated 3 years ago
• nitzanlab / biolord
  ☆82Updated last year
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆72Updated last week
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• theislab / prophet
  ☆36Updated this week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆48Updated this week
• mlbio-epfl / systema
  ☆32Updated 2 months ago
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated 3 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆93Updated last month
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆146Updated 6 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆85Updated this week
• Spencerfar / LatentVelo
  ☆26Updated 2 years ago
• const-ae / linear_perturbation_prediction-Paper
  ☆50Updated 2 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆144Updated 10 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆109Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆53Updated 2 weeks ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆69Updated 2 years ago
• cantinilab / scPRINT
  single cell foundation model
  ☆103Updated this week
• theislab / scTab
  ☆59Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 5 months ago
• theislab / moscot
  Multi-omic single-cell optimal transport tools
  ☆172Updated this week
• scverse / pertpy
  Single-cell perturbation analysis
  ☆201Updated last week
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆73Updated 2 weeks ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 4 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• dpeerlab / ENVI
  ☆50Updated 3 months ago
• Genentech / sVAE
  ☆63Updated 2 years ago