chanzuckerberg / scEvalsJam
☆12Updated 6 months ago
Alternatives and similar repositories for scEvalsJam:
Users that are interested in scEvalsJam are comparing it to the libraries listed below
- End-to-end analysis of spatial multi-omics data☆40Updated 3 weeks ago
- single cell foundation model for Gene network inference and more☆15Updated 5 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆54Updated this week
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- ☆29Updated 2 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆114Updated 2 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Updated 3 months ago
- ☆76Updated 7 months ago
- Models and datasets for perturbational single-cell omics☆150Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆58Updated 2 years ago
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆34Updated this week
- ☆57Updated 6 months ago
- ☆45Updated 2 years ago
- ☆23Updated last year
- ☆14Updated 2 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆24Updated 5 months ago
- ☆49Updated 9 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆38Updated this week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated last month
- A python port of the R package SCTransform:☆19Updated 3 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆82Updated 2 months ago
- ☆45Updated 4 months ago
- ☆51Updated last year
- spatial transcriptome, single cell☆67Updated last year
- ☆58Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆40Updated last year
- ☆41Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆63Updated 3 weeks ago
- Single-Cell (Perturbation) Model Library☆42Updated last week