chanzuckerberg / scEvalsJamLinks
☆12Updated 9 months ago
Alternatives and similar repositories for scEvalsJam
Users that are interested in scEvalsJam are comparing it to the libraries listed below
Sorting:
- single cell foundation model for Gene network inference and more☆16Updated 8 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆59Updated this week
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- End-to-end analysis of spatial multi-omics data☆76Updated 2 months ago
- ☆79Updated 9 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Updated 6 months ago
- ☆33Updated last month
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 3 months ago
- Models and datasets for perturbational single-cell omics☆152Updated 2 years ago
- ☆58Updated 8 months ago
- single cell foundation model for Gene network inference and more☆84Updated this week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆44Updated this week
- ☆26Updated 2 weeks ago
- ☆16Updated last month
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆49Updated this week
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆48Updated 4 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated last week
- ☆48Updated 2 weeks ago
- Additional code and analysis from the single-cell integration benchmarking project☆65Updated 2 years ago
- ☆63Updated last year
- Python implementation of the Slingshot pseudotime algorithm☆61Updated last year
- Single cell omics biology annotations☆51Updated last month
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆25Updated 2 months ago
- Modeling complex perturbations with CellFlow☆49Updated this week
- ☆52Updated last year
- Matplotlib style for scientific publications☆14Updated last week
- ☆23Updated last month
- ☆14Updated 2 years ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆20Updated 7 months ago