MontpellierRessourcesImagerie / imagej_macros_and_scriptsLinks
ImageJ macros and scripts written at the imaging facility MRI
☆35Updated 2 weeks ago
Alternatives and similar repositories for imagej_macros_and_scripts
Users that are interested in imagej_macros_and_scripts are comparing it to the libraries listed below
Sorting:
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 10 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last week
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Updated 3 years ago
- Generate markdown notebooks from ImageJ Macro☆25Updated 4 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated 11 months ago
- ☆51Updated 3 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 3 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- ☆16Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 9 months ago
- StarDist plugin for ImageJ☆31Updated 3 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆49Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated this week
- Lectures for a napari training course☆50Updated 2 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- ☆20Updated 4 years ago
- ☆11Updated 5 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Python scripts library for Aivia. Ask your questions on the forum >>☆15Updated 2 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆222Updated last year
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- MethodsJ2☆14Updated 3 years ago