MontpellierRessourcesImagerie / imagej_macros_and_scripts
ImageJ macros and scripts written at the imaging facility MRI
☆33Updated 2 weeks ago
Alternatives and similar repositories for imagej_macros_and_scripts:
Users that are interested in imagej_macros_and_scripts are comparing it to the libraries listed below
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 6 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆24Updated 6 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- quantixed FIJI update site☆16Updated 3 months ago
- Lectures for a napari training course☆50Updated last year
- ☆16Updated 8 months ago
- ☆10Updated 4 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆67Updated 8 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- ☆19Updated 3 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated this week
- Easily read and write ome-tiff images in python☆27Updated 11 months ago
- StarDist plugin for ImageJ☆29Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- ☆49Updated 6 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated last month
- Deconvolution of widefield microscopy images and generation of point spread functions☆46Updated 3 weeks ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated 2 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 6 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last month
- MethodsJ2☆14Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 6 months ago