MontpellierRessourcesImagerie / imagej_macros_and_scriptsLinks
ImageJ macros and scripts written at the imaging facility MRI
☆37Updated last week
Alternatives and similar repositories for imagej_macros_and_scripts
Users that are interested in imagej_macros_and_scripts are comparing it to the libraries listed below
Sorting:
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated last year
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- A platform for compiling, analyzing, and exploring tracking data☆48Updated 5 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 4 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- ☆13Updated 10 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 2 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆51Updated 8 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 3 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆58Updated 3 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Updated 5 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- ☆16Updated last year
- ☆20Updated 2 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆89Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 8 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Raw format to OME-TIFF converter☆56Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago