ImageJ macros and scripts written at the imaging facility MRI
☆38Mar 27, 2026Updated 3 weeks ago
Alternatives and similar repositories for imagej_macros_and_scripts
Users that are interested in imagej_macros_and_scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- ☆13Mar 26, 2025Updated last year
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 4 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Apr 6, 2026Updated last week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 2 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Swift Phenotypic Analysis of Cells☆10Jun 8, 2025Updated 10 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Jan 11, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- quantixed FIJI update site☆17Jan 9, 2026Updated 3 months ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 3 years ago
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 2 months ago
- An R package to detect collective spatio-temporal phenomena☆13Sep 25, 2025Updated 6 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Apr 7, 2026Updated last week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- ExTrack MLE for diffusive noisy single-particle tracks☆16Sep 13, 2025Updated 7 months ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- dask empowered fast4dreg☆16Mar 11, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆26Jun 13, 2024Updated last year
- ☆15Jul 29, 2022Updated 3 years ago
- ☆12Feb 23, 2026Updated last month
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆27Mar 16, 2026Updated last month
- ☆30Jan 19, 2026Updated 3 months ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 3 months ago
- Various parts made for fluorescence microscopy + optics work☆17Jul 22, 2019Updated 6 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 30, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Online platform to host your (Nextflow, Snakemake, ...) workflows with integrated result rendering.☆27Mar 10, 2026Updated last month
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 4 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Updated this week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- GPU-accelerated Image Processing library for C++☆16Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- ☆13Apr 27, 2020Updated 5 years ago