MontpellierRessourcesImagerie / imagej_macros_and_scripts
ImageJ macros and scripts written at the imaging facility MRI
☆33Updated 2 weeks ago
Alternatives and similar repositories for imagej_macros_and_scripts
Users that are interested in imagej_macros_and_scripts are comparing it to the libraries listed below
Sorting:
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 7 months ago
- StarDist plugin for ImageJ☆29Updated 3 years ago
- ☆11Updated last month
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- ☆10Updated 4 years ago
- ☆19Updated 4 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- ☆25Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 weeks ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆24Updated 7 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated 2 months ago
- Lectures for a napari training course☆50Updated last year
- QuickFigures is a toolset for creating scientific figures see publication for details☆35Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- QuPath extension for Cellsparse☆18Updated last week
- MethodsJ2☆14Updated 3 years ago
- ☆49Updated 2 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- ☆16Updated 9 months ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆47Updated last month
- quantixed FIJI update site☆16Updated 4 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Easily read and write ome-tiff images in python☆27Updated last year