Alternatives and similar repositories for imagej_macros_and_scripts

Users that are interested in imagej_macros_and_scripts are comparing it to the libraries listed below

• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆47Updated 4 months ago
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆23Updated last year
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆26Updated 4 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• ahklemm / ImageJMacro_Introduction
  A first intoduction to scripting in Fiji using the ImageJ Macro language.
  ☆26Updated last year
• wbif-bristol / ImageJ-Fiji-Level-2-course
  Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…
  ☆12Updated 3 years ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆136Updated 5 years ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated 2 years ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆40Updated 2 weeks ago
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆18Updated 2 months ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆151Updated 2 months ago
• haesleinhuepf / devbio-napari
  ☆51Updated 7 months ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆63Updated 2 years ago
• dlegland / mathematical_morphology_with_MorphoLibJ
  A collection of demonstration materials for MorphoLibJ.
  ☆12Updated 2 years ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆25Updated last month
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆57Updated last month
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆76Updated 4 months ago
• LabTrivedi / MOrgAna
  ☆31Updated 11 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 3 weeks ago
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 4 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated last week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆83Updated last month
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 7 months ago
• imagej / imagej.github.io
  The ImageJ wiki
  ☆28Updated last week
• quantixed / imagej-macros
  quantixed FIJI update site
  ☆17Updated last month
• maweigert / spotipy
  ☆12Updated last year
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last month
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆16Updated last year