cellcollective / ccapi
A Python Library to interact with the Cell Collective API v2
☆12Updated 2 years ago
Alternatives and similar repositories for ccapi:
Users that are interested in ccapi are comparing it to the libraries listed below
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Updated 3 months ago
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆11Updated this week
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Updated last year
- Static analyzer for dynamics of Automata Networks☆12Updated 3 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆12Updated this week
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆25Updated this week
- A simplified python interface to COPASI.☆19Updated last month
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated this week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated this week
- The standard for open-source GEMs on GitHub☆19Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 4 months ago
- Curation and analysis of metabolic models☆34Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆50Updated 2 months ago
- Metabolic Engineering Workbench☆38Updated 7 months ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Reconstruction algorithms for Python☆23Updated 3 months ago
- Python Environment for Modeling and Simulating Biological Systems☆110Updated this week
- libRoadRunner: A high-performance SBML simulator☆43Updated this week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- The BiGG Models website server☆81Updated 5 years ago
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆15Updated 3 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆102Updated last week
- The generic genome-scale metabolic model of Homo sapiens☆103Updated 2 weeks ago
- ReFramed: metabolic modeling package☆57Updated 5 months ago
- Repository of tutorials for The COBRA Toolbox☆19Updated 2 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆23Updated 2 years ago
- A web application to generate molecular cloning strategies in json format, and share them with others.☆18Updated last month
- memote – the genome-scale metabolic model test suite☆129Updated last year