Alternatives and similar repositories for ccapi

Users that are interested in ccapi are comparing it to the libraries listed below

• colomoto / bioLQM
  toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
  ☆19Updated 4 months ago
• BioSystemsUM / cobamp
  Constraint-based modeling framework for the enumeration of pathway analysis concepts
  ☆14Updated last year
• bnediction / bonesis
  Synthesis and Reprogramming of Most Permissive Boolean Networks
  ☆13Updated 4 months ago
• pauleve / pint
  Static analyzer for dynamics of Automata Networks
  ☆12Updated 4 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 5 months ago
• sybila / biodivine-boolean-models
  A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
  ☆13Updated last month
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆118Updated 2 weeks ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆133Updated last year
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• sbgn / libsbgn
  Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
  ☆16Updated 8 months ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• MetabolicAtlas / standard-GEM
  The standard for open-source GEMs on GitHub
  ☆19Updated last year
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆12Updated 3 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆66Updated 6 months ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆56Updated 4 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆50Updated last week
• colomoto / colomoto-docker
  The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
  ☆27Updated 3 weeks ago
• draeger-lab / EscherConverter
  A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…
  ☆16Updated 3 weeks ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆25Updated 8 months ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆117Updated last month
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆22Updated last week
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated 2 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆20Updated last month