Alternatives and similar repositories for pySBOL3:

Users that are interested in pySBOL3 are comparing it to the libraries listed below

• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 2 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆91Updated 8 months ago
• SynBioDex / SBOL-utilities
  Command-line utilities and scripts for manipulating SBOL data
  ☆18Updated last week
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆57Updated last week
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆43Updated last week
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated this week
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated 3 weeks ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• SBRG / bigg_models
  The BiGG Models website server
  ☆82Updated 5 years ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆110Updated last month
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆30Updated 5 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated 10 months ago
• yachielab / QUEEN
  QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
  ☆42Updated last week
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆23Updated 2 weeks ago
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆171Updated last month
• Bioprotocols / labop
  Laboratory Open Protocol (LabOP) Language
  ☆42Updated 6 months ago
• SynBioDex / pySBOL2
  A pure Python implementation of the SBOL standard.
  ☆22Updated 2 months ago
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆32Updated 2 weeks ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated last year
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆117Updated last month
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆41Updated 2 months ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆31Updated 11 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆79Updated last week
• iGEM-Engineering / iGEM-distribution
  Repository for collective design of an iGEM DNA distribution
  ☆44Updated 2 years ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆58Updated this week
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆26Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆80Updated 2 years ago
• JBEI / ART
  A machine learning tool to improve the effectiveness of strain engineering in synthetic biology
  ☆56Updated 2 months ago