Alternatives and similar repositories for pySBOL3

Users that are interested in pySBOL3 are comparing it to the libraries listed below

• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆63Updated 2 months ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆94Updated last year
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆68Updated 7 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆111Updated 4 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆30Updated last week
• JBEI / ART
  A machine learning tool to improve the effectiveness of strain engineering in synthetic biology
  ☆57Updated 5 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated 2 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated 9 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆47Updated 5 years ago
• SynBioDex / pySBOL2
  A pure Python implementation of the SBOL standard.
  ☆22Updated 5 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆43Updated 5 months ago
• Bioprotocols / labop
  Laboratory Open Protocol (LabOP) Language
  ☆42Updated 10 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆118Updated 2 years ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆182Updated this week
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆153Updated 3 months ago
• octantbio / octopus
  A scalable cloning system
  ☆25Updated 2 years ago
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆45Updated 2 months ago
• SynBioDex / SBOL-utilities
  Command-line utilities and scripts for manipulating SBOL data
  ☆18Updated this week
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated last year
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆36Updated 2 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated 2 weeks ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆139Updated 8 months ago
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆176Updated last month
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated 3 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆84Updated last week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆124Updated 3 weeks ago