SynBioDex / pySBOL3Links
Native python implementation of SBOL 3.0 specification
☆40Updated 6 months ago
Alternatives and similar repositories for pySBOL3
Users that are interested in pySBOL3 are comparing it to the libraries listed below
Sorting:
- nucleic acid folding☆104Updated last month
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- Release of the whole cell E. coli model.☆71Updated 10 months ago
- General low-level API☆50Updated 3 years ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆58Updated 3 weeks ago
- The BiGG Models website server☆83Updated 5 years ago
- The generic genome-scale metabolic model of Homo sapiens☆122Updated 3 weeks ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 11 months ago
- The consensus GEM for Saccharomyces cerevisiae☆113Updated last week
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 4 months ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆206Updated this week
- Laboratory Open Protocol (LabOP) Language☆44Updated last year
- Protein 3D structure prediction pipeline☆86Updated last week
- A pure Python implementation of the SBOL standard.☆22Updated 7 months ago
- An Open-Source web application to plan and document cloning and genome engineering☆36Updated this week
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 2 months ago
- Create force-directed graphs of RNA secondary structures.☆108Updated 5 years ago
- Software for the visualization of sequence-function relationships☆203Updated 4 months ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆44Updated last week
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- A scalable cloning system☆25Updated 2 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 9 years ago
- Degenerate Codon Design☆13Updated 5 years ago
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆51Updated this week
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 2 weeks ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Unified biological sequence manipulation in Python☆207Updated last year
- A route planner for DNA assembly☆36Updated 4 months ago
- Enzyme-constrained genome-scale models in python☆28Updated last year