pauleve / pintLinks
Static analyzer for dynamics of Automata Networks
☆12Updated 4 years ago
Alternatives and similar repositories for pint
Users that are interested in pint are comparing it to the libraries listed below
Sorting:
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Updated 2 weeks ago
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆13Updated 2 weeks ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆13Updated last month
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆13Updated last week
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated 7 months ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated last week
- Python Environment for Modeling and Simulating Biological Systems☆122Updated last month
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Updated 2 years ago
- netZooPy is a network biology package implemented in Python.☆89Updated 2 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆148Updated last week
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆26Updated last week
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Updated 7 months ago
- ☆77Updated 3 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- ReFramed: metabolic modeling package☆59Updated 4 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆57Updated last month
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆92Updated 7 months ago
- Pyro models of SARS-CoV-2 variants☆78Updated last year
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆25Updated last month
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆49Updated 9 months ago
- Reconstruction algorithms for Python☆25Updated 10 months ago
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆44Updated last year
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Python API for Xena Hub☆53Updated 2 years ago
- AIRR Community Data Standards☆37Updated 2 weeks ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 3 months ago
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- Simulate microbial community batch culture experiments.☆42Updated 10 months ago
- A python toolbox for 13C metabolic flux analysis☆23Updated last month
- Fishers Exact Test for Python (Cython)☆66Updated 5 months ago