Alternatives and similar repositories for synapsePythonClient

Users that are interested in synapsePythonClient are comparing it to the libraries listed below

• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆105Updated 7 years ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆55Updated 3 months ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆39Updated 4 years ago
• NCI-GDC / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆62Updated last week
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆55Updated 2 years ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆130Updated 5 months ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆97Updated last year
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆52Updated 7 years ago
• NCI-GDC / gdc-client
  GDC Data Transfer Tool
  ☆155Updated 7 months ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 6 years ago
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆42Updated last year
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆119Updated 7 months ago
• eyurtsev / FlowCytometryTools
  A python package for visualization and analysis of high-throughput flow cytometry data
  ☆126Updated 2 years ago
• eiriniar / CellCnn
  Representation Learning for detection of phenotype-associated cell subsets
  ☆66Updated 5 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 6 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆52Updated this week
• MaayanLab / appyter-catalog
  A catalog of appyter notebooks
  ☆41Updated last month
• bhklab / PharmacoDB
  Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
  ☆47Updated 7 years ago
• saeyslab / FlowCytometryScripts
  ☆25Updated 9 years ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 3 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆45Updated 6 months ago
• jacoblevine / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆141Updated 5 years ago
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆73Updated 5 years ago
• hmsrc / user-training
  HMS Research Computing User Training
  ☆92Updated 3 months ago
• biocommons / eutils
  simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
  ☆63Updated last month
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆61Updated 5 years ago
• single-cell-data / TileDB-SOMA
  Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
  ☆121Updated last week
• kipoi / kipoi
  Kipoi's model zoo API
  ☆240Updated last month