Alternatives and similar repositories for synapsePythonClient

Users that are interested in synapsePythonClient are comparing it to the libraries listed below

• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆92Updated 6 months ago
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆105Updated 6 years ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆53Updated 2 years ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆115Updated last month
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• NCI-GDC / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆60Updated last week
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆42Updated 3 weeks ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆127Updated last month
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• MaayanLab / appyter-catalog
  A catalog of appyter notebooks
  ☆37Updated last week
• BIMSBbioinfo / compgen2021
  ☆77Updated 3 years ago
• eyurtsev / FlowCytometryTools
  A python package for visualization and analysis of high-throughput flow cytometry data
  ☆121Updated last year
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆50Updated 3 weeks ago
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆42Updated 5 months ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆48Updated 2 months ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• biocommons / eutils
  simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
  ☆62Updated last year
• sebriois / biomart
  Python biomart API
  ☆66Updated 2 years ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 11 months ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆28Updated 7 years ago
• NCI-GDC / gdc-client
  GDC Data Transfer Tool
  ☆149Updated last month
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆145Updated this week
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆41Updated last month
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆57Updated 4 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆74Updated 2 years ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆100Updated this week
• hmsrc / user-training
  HMS Research Computing User Training
  ☆91Updated 3 months ago