Sage-Bionetworks / synapsePythonClient

Related projects ⓘ

Alternatives and complementary repositories for synapsePythonClient

• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated last year
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆52Updated last year
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆101Updated 5 years ago
• broadinstitute / gdctools
  Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons
  ☆31Updated 6 years ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆108Updated last week
• vindelorme / PlateEditor
  Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
  ☆20Updated last year
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 3 months ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆49Updated 6 months ago
• NCIP / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆68Updated 3 months ago
• sebriois / biomart
  Python biomart API
  ☆63Updated last year
• NCI-GDC / gdcdictionary
  Data dictionary for the GDC
  ☆50Updated 2 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated last year
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆47Updated 8 months ago
• NCI-GDC / gdc-client
  GDC Data Transfer Tool
  ☆145Updated 2 months ago
• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆84Updated 3 weeks ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆117Updated 3 weeks ago
• Sage-Bionetworks / schematic
  Package for biomedical data model and metadata ingress management
  ☆22Updated this week
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• NCI-GDC / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆60Updated this week
• MaayanLab / appyter-catalog
  A catalog of appyter notebooks
  ☆35Updated 3 weeks ago
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆38Updated 2 years ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆83Updated 2 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆66Updated 2 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆81Updated 4 months ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 4 years ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆53Updated 5 months ago
• PMBio / scLVM
  scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…
  ☆104Updated last year
• eiriniar / CellCnn
  Representation Learning for detection of phenotype-associated cell subsets
  ☆65Updated 4 years ago
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 6 years ago
• OBF / obf-docs
  Official documents of the Open Bioinformatics Foundation
  ☆39Updated this week