Alternatives and similar repositories for octopus:

Users that are interested in octopus are comparing it to the libraries listed below

• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆55Updated last year
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆30Updated 10 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆112Updated last week
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆90Updated 7 months ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated last year
• hsalis / Ribosome-Binding-Site-Calculator-v1.0
  The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…
  ☆55Updated 9 years ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆175Updated this week
• Edinburgh-Genome-Foundry / codon-usage-tables
  Codon usage tables in code-friendly format + Python bindings
  ☆35Updated last month
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆102Updated 4 years ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆42Updated 2 weeks ago
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆22Updated last week
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆37Updated last week
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆49Updated 2 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆71Updated last week
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago
• benchling / clustalo-python
  A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)
  ☆22Updated 3 years ago
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆43Updated 5 months ago
• jvrana / benchling-api
  A python wrapper for the benchling api
  ☆50Updated 4 years ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆28Updated 4 months ago
• Bioprotocols / labop
  Laboratory Open Protocol (LabOP) Language
  ☆41Updated 5 months ago
• nebiolabs / plate-map
  A flexible tool for defining the contents of 96 well plates.
  ☆47Updated 8 months ago
• latendre / PythonCyc
  ☆22Updated 4 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• benchling / integration-examples
  Example usage of the Benchling API: https://docs.benchling.com/
  ☆31Updated last year
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated 2 years ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆41Updated 3 weeks ago
• barricklab / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆13Updated 5 months ago
• Edinburgh-Genome-Foundry / crazydoc
  Read DNA sequences from colourful Microsoft Word documents
  ☆32Updated last year
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated last week