octantbio / octopusLinks
A scalable cloning system
☆25Updated 2 years ago
Alternatives and similar repositories for octopus
Users that are interested in octopus are comparing it to the libraries listed below
Sorting:
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆63Updated 6 months ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆58Updated 10 years ago
- Create force-directed graphs of RNA secondary structures.☆110Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- nucleic acid folding☆108Updated 3 months ago
- An Open-Source web application to plan and document cloning and genome engineering☆40Updated this week
- An RNA manipulation library.☆56Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated 2 weeks ago
- A flexible tool for defining the contents of 96 well plates.☆50Updated last year
- A PCR primer tool for DNA assembly flows☆34Updated last year
- Codon usage tables in code-friendly format + Python bindings☆40Updated 7 months ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆209Updated last week
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆44Updated 5 years ago
- Software for the visualization of sequence-function relationships☆206Updated 6 months ago
- WebLogo 3: Sequence Logos redrawn☆152Updated 7 months ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated last year
- Comprehensive Python client for the Uniprot REST API☆53Updated 2 months ago
- a DNA assembly library☆22Updated 3 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated 3 weeks ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆45Updated this week
- A route planner for DNA assembly☆36Updated 6 months ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 6 months ago
- Release of the whole cell E. coli model.☆73Updated last year
- 👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.☆29Updated 7 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 4 years ago
- Tool for deep mutational scanning experiments.☆55Updated 9 months ago
- Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project☆119Updated last year
- General low-level API☆50Updated 3 years ago
- Chromosome polymer simulations and in silico capture experiments☆52Updated last month
- Webserver and command line tool for annotating engineered plasmids☆134Updated 4 months ago