octantbio / octopusLinks
A scalable cloning system
☆25Updated 2 years ago
Alternatives and similar repositories for octopus
Users that are interested in octopus are comparing it to the libraries listed below
Sorting:
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆63Updated 2 months ago
- nucleic acid folding☆94Updated last year
- a DNA assembly library☆22Updated last year
- Create force-directed graphs of RNA secondary structures.☆105Updated 5 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆182Updated this week
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 9 years ago
- Tool for deep mutational scanning experiments.☆53Updated 4 months ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 9 months ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 2 months ago
- General low-level API☆50Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated 2 weeks ago
- Software for the visualization of sequence-function relationships☆201Updated 2 months ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- Unified biological sequence manipulation in Python☆207Updated last year
- A flexible tool for defining the contents of 96 well plates.☆49Updated last year
- WebLogo 3: Sequence Logos redrawn☆153Updated 3 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- A route planner for DNA assembly☆36Updated 2 months ago
- An RNA manipulation library.☆58Updated last year
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆25Updated 3 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- An Open-Source web application to plan and document cloning and genome engineering☆30Updated last week
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 10 months ago
- Webserver and command line tool for annotating engineered plasmids☆124Updated 3 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆43Updated 5 months ago
- Peptide-MHC I binding affinity prediction☆211Updated 2 months ago
- Codon usage tables in code-friendly format + Python bindings☆37Updated 2 months ago