bnediction / mpbn

Related projects: ⓘ

• bnediction / bonesis
  Synthesis and Reprogramming of Most Permissive Boolean Networks
  ☆11Updated 3 weeks ago
• sybila / biodivine-boolean-models
  A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
  ☆12Updated 11 months ago
• pauleve / pint
  Static analyzer for dynamics of Automata Networks
  ☆12Updated 3 years ago
• colomoto / colomoto-docker
  The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
  ☆25Updated this week
• colomoto / bioLQM
  toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
  ☆19Updated last year
• CASCI-lab / CANA
  CANAlization: Control & Redundancy in Boolean Networks
  ☆22Updated last month
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆19Updated this week
• BioSystemsUM / cobamp
  Constraint-based modeling framework for the enumeration of pathway analysis concepts
  ☆14Updated last year
• sbgn / libsbgn
  Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
  ☆15Updated 2 years ago
• jcrozum / pystablemotifs
  Python library for attractor identification and control in Boolean networks
  ☆28Updated 3 months ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆21Updated last month
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆17Updated this week
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated this week
• ialbert / booleannet
  Boolean Network Modeling
  ☆38Updated 4 years ago
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆12Updated last year
• bioasp / caspo
  Reasoning on the response of logical signaling networks with Answer Set Programming
  ☆13Updated 2 years ago
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆43Updated 2 months ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆19Updated 3 weeks ago
• sysbio-curie / Logical_modelling_pipeline
  Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…
  ☆10Updated 4 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 3 years ago
• cytoscape / py4cytoscape
  Python library for calling Cytoscape Automation via CyREST
  ☆69Updated 2 weeks ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆52Updated 10 months ago
• Tchanders / NetworkInference.jl
  Methods for inferring undirected networks from data
  ☆43Updated 3 years ago
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated last year
• Snakemake-Profiles / pbs-torque
  ☆16Updated 11 months ago
• MathOnco / HAL
  HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs
  ☆37Updated last month
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆36Updated 2 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆91Updated 3 weeks ago
• gletort / PhysiBoSS
  Multiscale simulation of multi-cellular system
  ☆26Updated 4 years ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆134Updated 2 months ago