bnediction / mpbnLinks
Brief Python implementation of Most Permissive Boolean Networks
☆20Updated 2 weeks ago
Alternatives and similar repositories for mpbn
Users that are interested in mpbn are comparing it to the libraries listed below
Sorting:
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆15Updated last week
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆17Updated 4 months ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated last week
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Updated 3 weeks ago
- Static analyzer for dynamics of Automata Networks☆12Updated 4 years ago
- CANAlization: Control & Redundancy in Boolean Networks☆26Updated last week
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆13Updated 3 months ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆51Updated last year
- Boolean Network Modeling☆40Updated 5 years ago
- A collaborative review of the emerging COVID-19 literature. Join the chat here:☆118Updated last year
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- This is the maintened version of PySankey (pySankeyBeta on Pypi)☆42Updated 2 weeks ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆12Updated last month
- Python library for attractor identification and control in Boolean networks☆31Updated 2 months ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- The uncompromising Snakemake code formatter☆181Updated last month
- A tool for creating Python implementations of SBML models.☆15Updated 3 years ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Updated last week
- ☆17Updated 2 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Updated 2 months ago
- A simplified python interface to COPASI.☆24Updated 2 months ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆36Updated last year
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆29Updated this week
- Learning causal or non-causal graphical models using information theory☆32Updated 5 months ago
- Methods for inferring undirected networks from data☆46Updated 4 years ago
- A repository to practice contributing to a Manubot manuscript☆48Updated 6 months ago
- AIRR Community Data Standards☆38Updated 3 weeks ago
- Official documents of the Open Bioinformatics Foundation☆41Updated this week
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- Prism themes for plotnine, inspired by ggprism.☆16Updated 3 months ago