Alternatives and similar repositories for mpbn:

Users that are interested in mpbn are comparing it to the libraries listed below

• bnediction / bonesis
  Synthesis and Reprogramming of Most Permissive Boolean Networks
  ☆11Updated 2 weeks ago
• sybila / biodivine-boolean-models
  A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
  ☆12Updated 2 weeks ago
• colomoto / colomoto-docker
  The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
  ☆25Updated 2 weeks ago
• colomoto / bioLQM
  toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks
  ☆19Updated this week
• pauleve / pint
  Static analyzer for dynamics of Automata Networks
  ☆12Updated 4 years ago
• CASCI-lab / CANA
  CANAlization: Control & Redundancy in Boolean Networks
  ☆22Updated 6 months ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆23Updated this week
• sysbio-curie / Logical_modelling_pipeline
  Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…
  ☆9Updated 5 years ago
• Tchanders / NetworkInference.jl
  Methods for inferring undirected networks from data
  ☆44Updated 3 years ago
• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆44Updated 3 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆54Updated last year
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• saezlab / CellNOptR
  Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
  ☆11Updated 10 months ago
• bioasp / caspo
  Reasoning on the response of logical signaling networks with Answer Set Programming
  ☆13Updated 2 years ago
• BioSystemsUM / cobamp
  Constraint-based modeling framework for the enumeration of pathway analysis concepts
  ☆14Updated last year
• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆13Updated 2 years ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆31Updated last week
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆22Updated 3 months ago
• jcrozum / pystablemotifs
  Python library for attractor identification and control in Boolean networks
  ☆28Updated 8 months ago
• bicycle1885 / CellFishing.jl
  Fast and scalable cell search tool
  ☆42Updated 5 years ago
• tlnagy / FCSFiles.jl
  🧫 Read Flow Cytometry Standard (FCS) files in Julia
  ☆17Updated 2 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆69Updated last year
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago
• sbgn / libsbgn
  Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
  ☆15Updated 4 months ago
• ialbert / booleannet
  Boolean Network Modeling
  ☆38Updated 5 years ago
• iosonofabio / singlet
  Single cell RNA Seq data analysis with quantitative phenotypes
  ☆14Updated 4 years ago
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 2 years ago
• BioJulia / BioAlignments.jl
  Sequence alignment tools
  ☆61Updated 6 months ago
• HaojiaWu / CellScopes.jl
  A Julia package for single cell and spatial data analysis
  ☆33Updated last month
• gdurif / pCMF
  pCMF R package
  ☆14Updated 5 years ago